Locus 2419

Sequence ID 2R_DroMel_CAF1
Location 8,709,075 – 8,709,169
Length 94
Max. P 0.704808
window4005

overview

Window 5

Location 8,709,075 – 8,709,169
Length 94
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 82.37
Mean single sequence MFE -26.56
Consensus MFE -9.78
Energy contribution -11.30
Covariance contribution 1.52
Combinations/Pair 1.08
Mean z-score -2.69
Structure conservation index 0.37
SVM decision value 0.36
SVM RNA-class probability 0.704808
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8709075 94 + 20766785
CGGCUA-AGUAUAU----GUGUGCAUAUUACAUGUGGAGCAAAAAGCAUCAGGAUGUAUGACUAAGGAUAU---GUAUAUAUAC----------UACGAGGAAAAGCGAAAA
..(((.-.((((((----(((((((((((((((.(.((((.....)).)).).)))).........)))))---))))))))).----------))).......)))..... ( -20.00)
>DroSec_CAF1 15404 98 + 1
CGGCUA-AGUAUAUGUAUGUGUGCAUAUUACAUGUGGAGCAAAAAGCGUCAGGAUGUAUGACUAAGGAUAU---GUAUAUAUAC----------UCCGAGGAAAAGCGAAAA
..(((.-.......(((((((((((((((.........((.....))((((.......))))....)))))---))))))))))----------((....))..)))..... ( -24.80)
>DroSim_CAF1 18385 98 + 1
CGGCUA-AGUAUAUGUAUGUGUGCAUAUUACAUGUGGAGCAAAAAGCGUCAGGAUGUAUGACUAAGGAUAU---GUAUAUAUAC----------UCCGAGGAAAAGCGAAAA
..(((.-.......(((((((((((((((.........((.....))((((.......))))....)))))---))))))))))----------((....))..)))..... ( -24.80)
>DroEre_CAF1 16109 108 + 1
CGGCUCCAGUAUA----UGUGUGUAAAGUACAUGUGGAGCAGAAAGUGCCAGGACGUAUGACUAAGUAUAUCCUGUAUAUAUACUGACAUAUACUCAGAGGAAAAGCGAAAA
...(((.((((((----((((((((..((((.((.....))....))))(((((..(((......)))..)))))....)))))..)))))))))..)))............ ( -26.30)
>DroYak_CAF1 15997 111 + 1
CGGCUC-GGUAUAUGUAUGUGUGUGUGGUACAUGUGGAGCAAAAAGUGCCAGGAUAUAUGACUAAGUAUAUCCUGUAUAUAUACUGACAUGUACGCCGAGGAAAAGCGAAAA
((((..-.((((((((..(((((((((((((.((.....))....)))))(((((((((......)))))))))..))))))))..)))))))))))).............. ( -36.90)
>consensus
CGGCUA_AGUAUAUGUAUGUGUGCAUAUUACAUGUGGAGCAAAAAGCGUCAGGAUGUAUGACUAAGGAUAU___GUAUAUAUAC__________UCCGAGGAAAAGCGAAAA
..(((...(((((((((((((((.....))))).(((.((.....)).))).......................))))))))))..........((....))..)))..... ( -9.78 = -11.30 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:41 2006