Locus 2417

Sequence ID 2R_DroMel_CAF1
Location 8,697,546 – 8,697,666
Length 120
Max. P 0.500000
window4001

overview

Window 1

Location 8,697,546 – 8,697,666
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.83
Mean single sequence MFE -41.27
Consensus MFE -26.33
Energy contribution -27.42
Covariance contribution 1.09
Combinations/Pair 1.39
Mean z-score -1.55
Structure conservation index 0.64
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8697546 120 - 20766785
CAACUGGAACUGCAGCAGGCGCUGCUGCAACAGCAGCUGCAAGGUCAGAGCAUCAUGAUCCAGGAUCAAGCCGGCAACCUGGUGCCCCUGCAGCUGGACGGAACCCAGGCGAUAUACACG
...((((...((((((((...))))))))....((((((((.((.....(((((((((((...)))))....(....).)))))))).))))))))........))))............ ( -44.50)
>DroVir_CAF1 4600 120 - 1
CAGCUGGAGUUGCAGCAGGCUUUGCUGCAGCAACAGCUGCACGGGCAGAGCAUUAUGAUACAGGAUCAGGCGGGCAAUCUGGUGCCAUUGCAGCUGGAUGGCACCCAAACCAUCUACACA
((((((.(((.(((.((((((((((((((((....)))))...))))))))....((((.....))))..........))).))).))).))))))(((((........)))))...... ( -49.20)
>DroGri_CAF1 4548 120 - 1
CAGUUGGAGUUGCAACAGGCGCUGUUGCAGCAACAGUUGCACGGUCAGAGCAUCAUGAUACAGGAUCAGGCGGGCAAUUUGGUGCCACUGCAACUCGAUGGCACACAGACAAUAUACACA
..((((((((((((...((((((..((((((....))))))..(((...((....((((.....)))).)).))).....))))))..))))))))..((.....))..))))....... ( -38.20)
>DroWil_CAF1 8279 120 - 1
CAACUGGAAUUGCAACAGGCGCUAUUACAACAACAACUUCAUGGCCAAAGCAUUAUGAUACAGGAUCAGGCUGGUAAUCUAGUGCCAUUGCAGCUAGAUGGAACGCAGACAAUAUACACG
((.((((...(((((..(((((((.........((......))((((..((....((((.....)))).))))))....))))))).))))).)))).)).................... ( -26.60)
>DroMoj_CAF1 4782 120 - 1
CAGCUGGAGUUGCAGCAGGCACUGCUGCAGCAGCAACUGCAUGGACAGAGCAUCAUGAUCCAGGAUCAGGCGGGCAAUCUGGUGCCGCUGCAGCUGGACGGCACGCAGACUAUUUACACA
..(((...((((((((((...)))))))))))))..((((.....((((((....(((((...))))).....))..))))((((((((......)).))))))))))............ ( -46.50)
>DroAna_CAF1 5917 120 - 1
CAGCUGGAACUGCAACAGGCACUGCUGCAGCAACAGCUGCACGGCCAGAGCAUAAUGAUCCAGGACCAGGCCGGCAACCUGGUGCCCCUCCAACUGGAUGGUUCGCAGGCGAUUUAUACG
((((((...(((((.(((...))).)))))...))))))....(((...((..(((.((((((....(((..((((......)))))))....)))))).))).)).))).......... ( -42.60)
>consensus
CAGCUGGAAUUGCAACAGGCGCUGCUGCAGCAACAGCUGCACGGCCAGAGCAUCAUGAUACAGGAUCAGGCGGGCAAUCUGGUGCCACUGCAGCUGGAUGGCACGCAGACAAUAUACACA
((((((...(((((((((...)))))))))...))))))....(((...((....((((.....)))).)).)))..((((((((((((......)).)))))).))))........... (-26.33 = -27.42 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:37 2006