Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,687,912 – 8,688,003 |
Length | 91 |
Max. P | 0.919946 |
Location | 8,687,912 – 8,688,003 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 74.54 |
Mean single sequence MFE | -21.66 |
Consensus MFE | -8.97 |
Energy contribution | -9.29 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.33 |
Mean z-score | -2.08 |
Structure conservation index | 0.41 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919946 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8687912 91 - 20766785 AGAGACCAAAACAAAAGGC--------GCAAGAACGGAAGACCAGCCAAAAUGUUUCGAUUUGCAGUAAUGCCAAAAUAGAAAUA---------UCGCCGGCACAACU ................(((--------....)..(....).)).(((...(((((((.(((((((....)))..)))).))))))---------)....)))...... ( -17.50) >DroSec_CAF1 506 91 - 1 AGAGACCAAAACAAAAGAC--------GCAAAAGCGGAAGAGCAGCCGAAAUGUUUCGAUUUGCAGUGAUGCAAAAAUAGAAAUG---------UCGCCGGCACAACU ..................(--------((....)))........((((..(((((((..((((((....))))))....))))))---------)...))))...... ( -22.00) >DroSim_CAF1 505 91 - 1 AGAGACCACAACAAAAGAC--------GCAAAAGCGGAAGAGCAGCCGAAAUGUUUCGAUUUGCAGUGAUGCAAAAAUAGAAAUG---------UCGCCGGCACAACU ..................(--------((....)))........((((..(((((((..((((((....))))))....))))))---------)...))))...... ( -22.00) >DroYak_CAF1 504 91 - 1 AGAGACCAAAACAAAAGAC--------GUGAAAACGGAAGAGCACCCGAACCGCUUCGAUUUGCACGGAUGCAAAAAUAGAAGUG---------UCGUCGGCACGACU ..................(--------(((....(....).....((((..((((((..((((((....))))))....))))))---------...))))))))... ( -23.70) >DroAna_CAF1 495 106 - 1 AGA-ACCAAAACAAAAUUCUCGGUAGGGGGAACACGGAAGUGCAGCCAAUGAAUUAAAAUUGGCAAAGAUGCAAAAAUAAGAAGAGCACACGGAUCCCUGACAUCA-U ...-..................((..(((((.(.((...((((.((((((........))))))....((......)).......)))).))).))))).))....-. ( -23.10) >consensus AGAGACCAAAACAAAAGAC________GCAAAAACGGAAGAGCAGCCGAAAUGUUUCGAUUUGCAGUGAUGCAAAAAUAGAAAUG_________UCGCCGGCACAACU ..................................(((..............((((((..((((((....))))))....))))))............)))........ ( -8.97 = -9.29 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:36 2006