Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,687,521 – 8,687,613 |
Length | 92 |
Max. P | 0.968009 |
Location | 8,687,521 – 8,687,613 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 86.11 |
Mean single sequence MFE | -28.28 |
Consensus MFE | -21.80 |
Energy contribution | -22.73 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.07 |
Mean z-score | -2.56 |
Structure conservation index | 0.77 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.968009 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8687521 92 + 20766785 ---UCCCCGGAUGUACAAUACAUACAUCAAUA--CAUAGAUGUGUGCAUAGUUAGAUGUACAUCAGGUAACCCAAGGUUGGCGCCGGCUUUAUGCGC ---...(((((((((((((.((((((((....--....)))))))).)).......)))))))).(.(((((...))))).)..))).......... ( -25.71) >DroSec_CAF1 107 95 + 1 CCCUCCACCGAUGUACAAUACAUACAUCAAUA--CAUAGAUGUGUGCAUAGUUAGAUGUACAUCGGGUAACCCAAGGUUAGCGCCGGCUUUAUGCGC .......((((((((((((.((((((((....--....)))))))).)).......)))))))))).(((((...)))))((((.........)))) ( -29.81) >DroSim_CAF1 107 95 + 1 CCCACCACCGAUGUACAAUACAUACAUCAAUA--CAUAGAUGUGUGCAUAGUUAGAUGUACAUCGGGUAACCCAAGGUUGGCGCCGGCUUUAUGCGC .......((((((((((((.((((((((....--....)))))))).)).......)))))))))).......(((((((....)))))))...... ( -29.31) >DroYak_CAF1 107 90 + 1 CCCUCCACGGAUGUACA-UACAUAAAUGUAUAAAAAUGUAU--GUACAU----GUAUGUACAUCAGGUAACCCAAGGUUGGCGCCGGCUUUAUGCGC .......((((((((((-(((((..(((((((....)))))--))..))----))))))))))).(.(((((...))))).)..))((.....)).. ( -28.30) >consensus CCCUCCACCGAUGUACAAUACAUACAUCAAUA__CAUAGAUGUGUGCAUAGUUAGAUGUACAUCAGGUAACCCAAGGUUGGCGCCGGCUUUAUGCGC .......((((((((((((.((((((((..........)))))))).)).......)))))))))).(((((...)))))((((.........)))) (-21.80 = -22.73 + 0.94)
Location | 8,687,521 – 8,687,613 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 86.11 |
Mean single sequence MFE | -30.54 |
Consensus MFE | -21.55 |
Energy contribution | -22.86 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.03 |
Mean z-score | -2.69 |
Structure conservation index | 0.71 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946612 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8687521 92 - 20766785 GCGCAUAAAGCCGGCGCCAACCUUGGGUUACCUGAUGUACAUCUAACUAUGCACACAUCUAUG--UAUUGAUGUAUGUAUUGUACAUCCGGGGA--- ((((.........))))...(((((((((((...(((((((((.....(((((........))--))).)))))))))...))).)))))))).--- ( -28.60) >DroSec_CAF1 107 95 - 1 GCGCAUAAAGCCGGCGCUAACCUUGGGUUACCCGAUGUACAUCUAACUAUGCACACAUCUAUG--UAUUGAUGUAUGUAUUGUACAUCGGUGGAGGG ((((.........))))...((((.(.....((((((((((.......(((((.(((((....--....))))).)))))))))))))))).)))). ( -32.51) >DroSim_CAF1 107 95 - 1 GCGCAUAAAGCCGGCGCCAACCUUGGGUUACCCGAUGUACAUCUAACUAUGCACACAUCUAUG--UAUUGAUGUAUGUAUUGUACAUCGGUGGUGGG ..........(((.((((......(((...)))((((((((.......(((((.(((((....--....))))).))))))))))))))))).))). ( -33.41) >DroYak_CAF1 107 90 - 1 GCGCAUAAAGCCGGCGCCAACCUUGGGUUACCUGAUGUACAUAC----AUGUAC--AUACAUUUUUAUACAUUUAUGUA-UGUACAUCCGUGGAGGG ((((.........))))...((((((....)).(((((((((((----(((...--.................))))))-))))))))....)))). ( -27.65) >consensus GCGCAUAAAGCCGGCGCCAACCUUGGGUUACCCGAUGUACAUCUAACUAUGCACACAUCUAUG__UAUUGAUGUAUGUAUUGUACAUCCGUGGAGGG ((((.........)))).((((...)))).(((((((((((.......(((((.(((((..........))))).))))))))))))))).)..... (-21.55 = -22.86 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:35 2006