Locus 2413

Sequence ID 2R_DroMel_CAF1
Location 8,683,523 – 8,683,643
Length 120
Max. P 0.601217
window3995

overview

Window 5

Location 8,683,523 – 8,683,643
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 83.61
Mean single sequence MFE -31.04
Consensus MFE -26.57
Energy contribution -26.03
Covariance contribution -0.54
Combinations/Pair 1.20
Mean z-score -1.37
Structure conservation index 0.86
SVM decision value 0.14
SVM RNA-class probability 0.601217
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8683523 120 - 20766785
UGUGAAAUUAACACUUUUUUCUAUUGGCAGUGAUGGGAAGUGUAUAUUUGGGUGUACCUGGCUGGUAGUCUAGAUACAACAAUUUACGCUAUGUGUCGCGAUCUAGUCUAGGUACAAGUA
..(.((((..(((((...(((((((......))))))))))))..)))).).(((((((((((((..(((..((((((.............))))))..))))))).))))))))).... ( -32.32)
>DroSim_CAF1 1330 120 - 1
UGUGAAAUUAACACUUUUUUCUAUUGGCAGUGAUGGGAAGUGUAUAUUUUGGCGUACCUGGCUGGUAGUCUAGGUACAACAAUUCAGUCUAGGUAGUGCGAUUUAGUCUAGGUACAAGAA
.((.(((.(((((((...(((((((......)))))))))))).)).))).))((((((((((((....))))((((.((............)).))))........))))))))..... ( -29.50)
>DroYak_CAF1 1319 116 - 1
UGUUAAAUUAACACUUU-UUCUAUUGGCAGUGAUGGGAAGUGUCUAUUUGGGCGUACCUAGCAGGCAAUCUAGGUAC---CAUUUAGUCUAGGUACUGUUAUUCAGUCUAGGUACUACAU
..((((((..(((((..-(((((((......))))))))))))..))))))..((((((((...(.(((...(((((---(..........))))))...))))...))))))))..... ( -31.30)
>consensus
UGUGAAAUUAACACUUUUUUCUAUUGGCAGUGAUGGGAAGUGUAUAUUUGGGCGUACCUGGCUGGUAGUCUAGGUACAACAAUUUAGUCUAGGUACUGCGAUUUAGUCUAGGUACAAGAA
..((((((..(((((...(((((((......))))))))))))..))))))..((((((((((((.......(((((...............))))).....)))).))))))))..... (-26.57 = -26.03 +  -0.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:32 2006