Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,683,053 – 8,683,167 |
Length | 114 |
Max. P | 0.804910 |
Location | 8,683,053 – 8,683,167 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.27 |
Mean single sequence MFE | -39.60 |
Consensus MFE | -33.38 |
Energy contribution | -33.17 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.08 |
Mean z-score | -2.26 |
Structure conservation index | 0.84 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804910 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8683053 114 + 20766785 AAUACUGCGCUG-----GGAUGCAUCAAUUGUGUCAUGGAGUUAGUCGGGUGCAUUGCUCGAUUUAUCUGCGAAAGUGGGCAUG-GUGUAGACAUGGUAGCUUCAUUCGAGCGCAUCAAG .....((((((.-----(((((((.....))))))((((((((((((((((.....)))))))...((..(....)..))((((-.......)))).))))))))).).))))))..... ( -41.00) >DroSim_CAF1 851 115 + 1 AAUACUGCGCUG-----GGAUGCAUCAAUUGUGUCAUGGAGUUAGUCGGGUGCAUUGCUCGAUUUAUCUGCGAAAGUGGGCAUAUAUGUAGACAUGGUAGCUUCAUUCGAGCGCAUCAAG .....((((((.-----(((((...(.((..((((........((((((((.....))))))))..((..(....)..))..........))))..)).)...))))).))))))..... ( -39.00) >DroYak_CAF1 829 118 + 1 AAUACUGCGAUGCGAUGCGAUGCAUCAAUUGUGUCAUGGAGUUAGUCGGGUGCAUUGCUCGAUUUAUCUGCGAAAACGGGCGU--UUGCAGCGAAUGUAGCUUCAUUCGAGCGCAUCAAG ........((((((...(((((((.....))))))(((((((((.((.(.((((.((((((.(((.......))).)))))).--.)))).)))...)))))))))..)..))))))... ( -38.80) >consensus AAUACUGCGCUG_____GGAUGCAUCAAUUGUGUCAUGGAGUUAGUCGGGUGCAUUGCUCGAUUUAUCUGCGAAAGUGGGCAU__AUGUAGACAUGGUAGCUUCAUUCGAGCGCAUCAAG .....((((((.......((((((.....))))))((((((((((((((((.....)))))))...((((((...((....))...)))))).....)))))))))...))))))..... (-33.38 = -33.17 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:31 2006