Locus 2411

Sequence ID 2R_DroMel_CAF1
Location 8,681,527 – 8,681,620
Length 93
Max. P 0.765771
window3993

overview

Window 3

Location 8,681,527 – 8,681,620
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 68.10
Mean single sequence MFE -18.47
Consensus MFE -8.57
Energy contribution -10.60
Covariance contribution 2.03
Combinations/Pair 1.17
Mean z-score -2.13
Structure conservation index 0.46
SVM decision value 0.51
SVM RNA-class probability 0.765771
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8681527 93 - 20766785
AAACCACCGAUAUGACAUCACAAAUGUGAAACUAAUGUUUUUCGAAAGAGAAAAUUAGAAAAUUGGUUUCAGGUGGCUGUAAAAAGAUUGUUU
...((((((((.....))).......((((((((((.((((((....))))))........)))))))))))))))................. ( -24.50)
>DroSec_CAF1 1364 93 - 1
AAGACACAAAUAUGCCAUCAUAAAUGUGAAACUAAUGUUUCUCGUGCGAGAAAAUUGGAAAAUUGGUUUCAGGUGGCUGUAAAAAGAUUGUUU
.............((((((.......((((((((((.((((((....))))))........))))))))))))))))................ ( -21.91)
>DroEre_CAF1 1405 76 - 1
AAGCCACCAAAAUGAGACCAGAAAUGUGAAAUUUAUGUU---AGUGCC--------------UAUAUUUUAAAGGGCUAUAAAAAGAAUAUUU
.((((.............((....))((((((.((.((.---...)).--------------)).))))))...))))............... (  -9.00)
>consensus
AAGCCACCAAUAUGACAUCACAAAUGUGAAACUAAUGUUU_UCGUGCGAGAAAAUU_GAAAAUUGGUUUCAGGUGGCUGUAAAAAGAUUGUUU
.((((((...........((....))((((((((((.((((((....))))))........)))))))))).))))))............... ( -8.57 = -10.60 +   2.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:30 2006