| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,681,222 – 8,681,323 |
| Length | 101 |
| Max. P | 0.549542 |
| Location | 8,681,222 – 8,681,323 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 85.48 |
| Mean single sequence MFE | -29.17 |
| Consensus MFE | -20.76 |
| Energy contribution | -21.95 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.549542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8681222 101 - 20766785 GUUGAGGUGGAGGCAUUGUCACUCACAUUAUGUGGGUCUAGCGACCUCCUCUCCACUUCCACUUCCACUUCCAAAUGGCACA-UCAUCCAAUUGAGUUGUUG ((.((((((((((....(((((((((.....)))))).....)))....)))))))))).))..............((((..-(((......)))..)))). ( -27.90) >DroSec_CAF1 1058 102 - 1 GGUGAGGUGGAGGCAUUGUCACUCACAUUAUGUGGGGCUGGCGACCUCCUCUCCACUUCCCCUGCCACUUCCAAAUGGCACAACCAUCCAAUUGAGUUGUUG ((.((((((((((..(((((((((((.....)))))..)))))).....)))))))))).)).((((........))))(((((((......)).))))).. ( -36.80) >DroEre_CAF1 1112 91 - 1 GGUGAGUCGGAGGCAUUGUCAAUCACAUUAUGUGGGUCUGGCGACCUCCUCUCCACUUCC----------CCAAAUGGCACA-UCAUCCAAUUGAGCUGUUG ((((((..(((((..((((((.((((.....))))...))))))))))).)).))))...----------...((((((...-(((......))))))))). ( -25.10) >DroYak_CAF1 1195 91 - 1 GCAGAGGUGGAGGCAUUGUCAACCACAUUAUGUGGAUGUGGCGACCUCCUCCCCACUUCC----------CCAAAUGGCACA-UCAUCCAAUUGAGUUGUUG ...((((((((((..((((((.((((.....))))...))))))...)))))..))))).----------......((((..-(((......)))..)))). ( -26.90) >consensus GGUGAGGUGGAGGCAUUGUCAAUCACAUUAUGUGGGUCUGGCGACCUCCUCUCCACUUCC__________CCAAAUGGCACA_UCAUCCAAUUGAGUUGUUG ((((.((.(((((..(((((((((((.....)))))..))))))))))).)).))))................((..((.((..........)).))..)). (-20.76 = -21.95 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:29 2006