| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,616,259 – 1,616,351 |
| Length | 92 |
| Max. P | 0.769958 |
| Location | 1,616,259 – 1,616,351 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 73.02 |
| Mean single sequence MFE | -28.73 |
| Consensus MFE | -16.74 |
| Energy contribution | -17.30 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.769958 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1616259 92 - 20766785 -GAGGCUCAAGCCGCGAUACUAGCGCGAAACUUGAUUAAAAAUUCAAGGCCAUGUUGUGGCACAUACGAGCGUUUGGAGCGAUACGGUGCGAG-------------- -....(((..((((((...(.(((((....(((((........)))))(((((...)))))........))))).)...))...))))..)))-------------- ( -26.60) >DroYak_CAF1 34930 101 - 1 -UAGUCUUAAGGCACGGUACUAGCGCGAAACUUGAUUAAAAUUUCAAGGCCAUGUUGUGGCACAAACAAGCAUUUGGAGCGAUAUGGACCGAG-----CUGAGACGA -..(((((..(((.((((.(((.(((....(((((........)))))(((((...))))).................)))...))))))).)-----))))))).. ( -33.20) >DroAna_CAF1 23482 107 - 1 CGAGACUUGGAACAUGCGACUAGCGCGAAACUUGAUUAAAAAUUCAAGGCCAUGUUGUGGCACAAACGAGCGUUUGAAACGAUCCGAGCUGAUCCGAAAUAAAACGA ..((.((((((.(.((((.....))))...(((((........)))))(((((...))))).(((((....)))))....).))))))))................. ( -26.40) >consensus _GAGACUUAAGACACGAUACUAGCGCGAAACUUGAUUAAAAAUUCAAGGCCAUGUUGUGGCACAAACGAGCGUUUGGAGCGAUACGGACCGAG______U_A_ACGA ...(((....))).((...(.(((((....(((((........)))))(((((...)))))........))))).)...)).......................... (-16.74 = -17.30 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:17 2006