Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,649,411 – 8,649,509 |
Length | 98 |
Max. P | 0.625630 |
Location | 8,649,411 – 8,649,509 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 81.07 |
Mean single sequence MFE | -26.90 |
Consensus MFE | -18.67 |
Energy contribution | -18.96 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.30 |
Mean z-score | -1.44 |
Structure conservation index | 0.69 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625630 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8649411 98 - 20766785 UGAAAUCCCAAAUUUGAUAUACAAUAAUUUCGACGCC-----ACUCACCUUUGCGUACAGUUGCUGCAUCUCCUUUGAGUAGCGCUUGUGCAGGGAUUCCUUG .(.((((((....((((.((......)).))))....-----............((((((.((((((.((......)))))))).)))))).)))))).)... ( -24.80) >DroSec_CAF1 3951 98 - 1 UGAAAUCCCAGAUUUAACAUACAGGAAUUCUGACGCC-----ACUCACCUUUGCGUACAGUUGCUGCAUCUCUUUUGAGUAGCGCUUGUGCAGGGAUUCCUUG ..(((((...))))).......(((((((((...((.-----..........))((((((.((((((.((......)))))))).)))))).))))))))).. ( -26.70) >DroSim_CAF1 4200 98 - 1 UAAAAUCCCAGAUUUAACAUACAGGAAUUCCGACGCC-----ACUCACCUUUGCGUACAGUUGCUGCAUCUCCUUUGAGUAGCGCUUGUGCAGGGAUUCCUUG ..(((((...))))).......(((((((((...((.-----..........))((((((.((((((.((......)))))))).)))))).))))))))).. ( -29.20) >DroEre_CAF1 4031 98 - 1 UGAAGGUCUAGAUAAAACAGCCAGGAAUACUGACGCC-----ACUUACCUUUGCGUACAGUUGCUGCAUCUCCUUUAAGUAGCGCUUGUGCAGGGAUUCCUUG ....(((............)))((((((.(((((((.-----..........))))((((.((((((...........)))))).)))).)))..)))))).. ( -22.30) >DroYak_CAF1 4077 98 - 1 UGAAAUUCCGGAAACAACAGCCAGGAAUUCCGACGCC-----ACUCACCUUUGCGUACAGUUGCUGCAUCUCCUUCGAGUAGCGCUUGUGCAGGGAUUCCUUG .........(....).......(((((((((...((.-----..........))((((((.((((((.((......)))))))).)))))).))))))))).. ( -30.30) >DroAna_CAF1 3716 102 - 1 GUUAUUCCCA-AUUGAGCGUAUUGAGGAGGAGACGCCUCAAUACUUACCUUUGUGUACAGUUGCUGCAUCUCCUUCACGUAUCUCUGGUGCAUCGACUCCUUG ..........-.......(((((((((.(....).)))))))))..............(((((.((((((................)))))).)))))..... ( -28.09) >consensus UGAAAUCCCAGAUUUAACAUACAGGAAUUCCGACGCC_____ACUCACCUUUGCGUACAGUUGCUGCAUCUCCUUUGAGUAGCGCUUGUGCAGGGAUUCCUUG ......................(((((((((...((................))((((((.((((((...........)))))).)))))).))))))))).. (-18.67 = -18.96 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:23 2006