Locus 2404

Sequence ID 2R_DroMel_CAF1
Location 8,641,398 – 8,641,511
Length 113
Max. P 0.523662
window3984

overview

Window 4

Location 8,641,398 – 8,641,511
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 85.75
Mean single sequence MFE -29.38
Consensus MFE -19.70
Energy contribution -20.60
Covariance contribution 0.90
Combinations/Pair 1.07
Mean z-score -1.75
Structure conservation index 0.67
SVM decision value -0.02
SVM RNA-class probability 0.523662
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8641398 113 - 20766785
AGGAAAAUGUCAAGUCCGCCAAUUGGUGCCUCAAUGAGCAGAUGCAUUGCAUAGGAAAACAGCAAGGUGAACCCUAGGGUCGACCAGAAGUUAAGCAUCUGAAAAUUUGAUAU
......(((((((((.((((....))))..........(((((((.((((...........))))(((..(((....)))..))).........)))))))...))))))))) ( -32.30)
>DroSec_CAF1 21566 113 - 1
AGGAAAAUGUCAAGUCCGCCAAUUGGUGCCUCAAUGAGCAGAUGCAAUGCAUAGGAGAACAGCAAGGUGAACCCUAAGGUCGACCAGAAGUUAAGCAUCUGAAAAUUGGGUAU
.(((...(....).)))(((....)))(((.((((...(((((((..(((...........))).(((..(((....)))..))).........)))))))...))))))).. ( -31.40)
>DroSim_CAF1 25243 113 - 1
AGGAAAAUGUCAAGUCCGCCAAUUGGUGCCUCAAUGAGCAGAUGCAAUGCAUAGGAAAACAGCAAGGUGAACCCUAAGGUCGACCAGAAGUUAAGCAUCUGAAAAUUGGGUAU
.(((...(....).)))(((....)))(((.((((...(((((((..(((...........))).(((..(((....)))..))).........)))))))...))))))).. ( -31.40)
>DroEre_CAF1 18971 100 - 1
AGGAAAAUGUCAAGUCCUCCGAAUGGGUCCUCAAUGAGCAGAUGCAUCACAUAGGAAAACAGCAAGGUGAAUCCAAU-------------AUGAGCAUCUGAAAAUUGUGUGU
((((.....((.........)).....))))((((...(((((((.(((.((.(((..((......))...))).))-------------.))))))))))...))))..... ( -23.10)
>DroYak_CAF1 21541 113 - 1
AGGAAAAUGUCGAGUCCUCCGAAUGGCGCCUCGAUGAGCAGAUGCAUUGCAUAGGAAAACAGUACGGUGAAUCCAAAGGUCGACCAGAUGUUAAGCAUCUGAAAAUUGGGUAU
.(((..((.....))..))).......(((.((((...(((((((...((((.(((..((......))...)))...((....))..))))...)))))))...))))))).. ( -28.70)
>consensus
AGGAAAAUGUCAAGUCCGCCAAUUGGUGCCUCAAUGAGCAGAUGCAUUGCAUAGGAAAACAGCAAGGUGAACCCUAAGGUCGACCAGAAGUUAAGCAUCUGAAAAUUGGGUAU
.(((..........)))(((....)))..((((((...(((((((......((((...((......))....)))).((....)).........)))))))...))))))... (-19.70 = -20.60 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:21 2006