| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,612,483 – 1,612,582 |
| Length | 99 |
| Max. P | 0.929662 |
| Location | 1,612,483 – 1,612,582 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 94.61 |
| Mean single sequence MFE | -29.43 |
| Consensus MFE | -25.33 |
| Energy contribution | -25.67 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.10 |
| Mean z-score | -3.08 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1612483 99 - 20766785 UCCAACAUAUGUUGGCUAUAAAAAGCAAAUUGUAAACAAAUCCAGUGCCUCGCACACGAGUGCAUCGUUACACGGGGCUCUUUUUGUGUGUAUGAUGCA .(((((....))))).........(((..(..((.(((((...((.((((((...((((.....))))....)))))).)).)))))...))..)))). ( -27.60) >DroSim_CAF1 18602 99 - 1 UCCAACAUAUGUUGGCUAUAAAAAGCAAAUUGUAAACAAAUCCAGUGCCUCGCACACGAGUGCAUCGUUACACGGGGCUCUUUUUGUGUGCAUGAUGCA .(((((....))))).........(((...((((.(((((...((.((((((...((((.....))))....)))))).)).))))).))))...))). ( -30.70) >DroYak_CAF1 30800 99 - 1 UCCAACAUAUGUUGGCUAUAAAAAGCUAAUUGUAAACAAAUCCAGUGCCUCGCACACGAAUGCAACAUUACACGAGGCGCUUUUUGUGUACAUGAUGCA .(((((....))))).........((....((((.(((((...(((((((((......((((...))))...))))))))).))))).))))....)). ( -30.00) >consensus UCCAACAUAUGUUGGCUAUAAAAAGCAAAUUGUAAACAAAUCCAGUGCCUCGCACACGAGUGCAUCGUUACACGGGGCUCUUUUUGUGUGCAUGAUGCA .(((((....))))).........(((...((((.(((((...((.((((((...((((.....))))....)))))).)).))))).))))...))). (-25.33 = -25.67 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:16 2006