Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,165,798 – 1,165,899 |
Length | 101 |
Max. P | 0.833443 |
Location | 1,165,798 – 1,165,899 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 73.57 |
Mean single sequence MFE | -18.97 |
Consensus MFE | -13.71 |
Energy contribution | -13.17 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.20 |
Mean z-score | -1.33 |
Structure conservation index | 0.72 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.833443 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1165798 101 - 20766785 CUUAUGUGAUCAAGGUCAAACGUCUUUCAAUUAAAUUAAUUCGAUCCCAGCUUGUUUGUUGCGGACUUGGUUGAUGAAAAACUAAGUUUAGACGGUUUAAU ......((((....))))..(((((...................(((((((......)))).)))(((((((.......)))))))...)))))....... ( -21.70) >DroSec_CAF1 1315 78 - 1 -----------------------CUUUCAAUUAGGUUAGUUCGGUAUGAGUUUGUUUGUUGCGGACUCUAUUGAUGGAAAACCAAGUUUAGACGGUUUAAU -----------------------.(((.((((.((((...((((((.((((((((.....)))))))))))))).....)))).)))).)))......... ( -17.40) >DroSim_CAF1 4888 78 - 1 -----------------------CUUUCAAUUAGGUUAGUUCGGUAUGAGUUUGUUUGUUGCGAACUCUAUUGAUGAAAAACCAAGUUUAGACGGUUUAAU -----------------------.(((.((((.((((...((((((.((((((((.....)))))))))))))).....)))).)))).)))......... ( -17.80) >consensus _______________________CUUUCAAUUAGGUUAGUUCGGUAUGAGUUUGUUUGUUGCGGACUCUAUUGAUGAAAAACCAAGUUUAGACGGUUUAAU ........................(((.((((.((((...((((((.((((((((.....)))))))))))))).....)))).)))).)))......... (-13.71 = -13.17 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:46 2006