Locus 2398

Sequence ID 2R_DroMel_CAF1
Location 8,639,239 – 8,639,359
Length 120
Max. P 0.974183
window3966

overview

Window 6

Location 8,639,239 – 8,639,359
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.87
Mean single sequence MFE -23.77
Consensus MFE -18.41
Energy contribution -18.60
Covariance contribution 0.19
Combinations/Pair 1.20
Mean z-score -2.46
Structure conservation index 0.77
SVM decision value 1.73
SVM RNA-class probability 0.974183
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8639239 120 - 20766785
UUUUAUACAAACUUCACAUACUUUUCAACGCCCAGUACUCAGCACUUCCAAGUCCUGUCAUCAGCGCCUUCAUAUCGUUGAGGCACAGCAGAUCAUCUUCACUCGAAAACUGGGACUCCA
..............................((((((..((...........((..((((.((((((.........))))))))))..)).((......))....))..))))))...... ( -22.40)
>DroSec_CAF1 19413 119 - 1
-UUUAUACAAACUUCACAUACUCUUCAACGCCCAGUACUCAGCACUUCCAAGUCCUGUCAUCAGCGCCUUCAUGUCGCUGAAGCACAGCUGAUCCUCUUCACUCGAAAACUGGGACUCCA
-.............................((((((..((((((((....)))..((((.((((((.(.....).)))))).).)))))))).....(((....))).))))))...... ( -26.80)
>DroSim_CAF1 23090 119 - 1
-UUUAUACAAACUUCACAUACUCUUCAACGCCCAGUACUCAGCACUUCCAAGUCCUGUCAUCAGCGCCUUCAUAUCGCUGAAGCACAGCUGAUCCUCUUCACUCGAAAACUGGGACUCCA
-.............................((((((..((((((((....)))..((((.((((((.........)))))).).)))))))).....(((....))).))))))...... ( -24.90)
>DroYak_CAF1 19394 113 - 1
UAGUAUUUUAACU--ACUUACUUUUCAACGCCCAGUACUCAGCACUUCGCAGUCCUGCCAUUAGCCUAGCCAUAUCGUUGAGGCACAACAGAUCCUCCACACCAACCAACUGGGA-----
((((......)))--)..............((((((.....((.....)).((..((((.(((((...........)))))))))..))...................)))))).----- ( -21.00)
>consensus
_UUUAUACAAACUUCACAUACUCUUCAACGCCCAGUACUCAGCACUUCCAAGUCCUGUCAUCAGCGCCUUCAUAUCGCUGAAGCACAGCAGAUCCUCUUCACUCGAAAACUGGGACUCCA
..............................((((((...............((..((((.((((((.........))))))))))..)).((......))........))))))...... (-18.41 = -18.60 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:03 2006