Locus 2396

Sequence ID 2R_DroMel_CAF1
Location 8,638,168 – 8,638,263
Length 95
Max. P 0.785121
window3964

overview

Window 4

Location 8,638,168 – 8,638,263
Length 95
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 71.93
Mean single sequence MFE -27.95
Consensus MFE -16.73
Energy contribution -17.28
Covariance contribution 0.56
Combinations/Pair 1.19
Mean z-score -1.44
Structure conservation index 0.60
SVM decision value 0.57
SVM RNA-class probability 0.785121
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8638168 95 - 20766785
------------AAGAAUUUGGCAGCCA-CGA-GAGUCGCACGUCUCGCCAAUGGCUGGCAAAUGACUUUUCAUGGCGCAAAGUUUUUGGCCAGGCGGCAG-AAGG----------GGGU
------------....(((((.((((((-(((-((........)))))....)))))).)))))..((((((.((.(((...((.....))...))).)))-))))----------)... ( -33.60)
>DroSec_CAF1 18301 75 - 1
------------AAGAAUUUGGCAGCCA-CGA-GAAUCGCACGUCUCGCCAAUGGUUGGCAAAUGACUUUUCAUGGCGCAAAGUUUUUG-------------------------------
------------((((((((.((.((((-.((-(((......(((..((((.....))))....)))))))).)))))).)))))))).------------------------------- ( -21.50)
>DroSim_CAF1 22017 75 - 1
------------AAGAAUUUGGCAGCCA-CGA-GAAUCGCACGUCUCGCCAAUGGUUGGCAAAUGACUUUUCAUGGCGCAAAGUUUUUG-------------------------------
------------((((((((.((.((((-.((-(((......(((..((((.....))))....)))))))).)))))).)))))))).------------------------------- ( -21.50)
>DroEre_CAF1 18168 75 - 1
------------AAGAAUUUGGCAGCCA-CGA-GAGUCGCACGUCUCGCCAAUGGCUGGCAAAUGACUUUUCAUGGCGCAAAGUUUUUG-------------------------------
------------((((((((.((.((((-.((-((((((...(((..(((...))).)))...))))))))..)))))).)))))))).------------------------------- ( -24.70)
>DroYak_CAF1 18326 100 - 1
------------AAGAAUUUGGCAGCCA-CGA-GAGUCGCACGUCUCGCCAAUGGCUGGCAAAUGACUUUUCAUGGCGCAAAGUUUUUGGCCAGGCGGCAA-GGGGGCUU-----UGGGU
------------(((.(((((.((((((-(((-((........)))))....)))))).)))))..)))......((.(((((((((..(((....)))..-.)))))))-----)).)) ( -35.50)
>DroAna_CAF1 18831 119 - 1
GAUUUCCCUUCGAAAUUUUUGGCAUCCAACGCCAAGCUGCACGUCUCGCCAAUGGCUGGCAAAUGACUUUUCAUUGCCCAAAACUUUUCAA-AGGAGAGAGAGAGAGAGUUGCAAAGGAU
......((((.......((((((.......)))))).((((..(((((((...))).(((((.(((....)))))))).....(((((...-..))))).....))))..)))))))).. ( -30.90)
>consensus
____________AAGAAUUUGGCAGCCA_CGA_GAGUCGCACGUCUCGCCAAUGGCUGGCAAAUGACUUUUCAUGGCGCAAAGUUUUUG_______________________________
............((((((((.((.((((.....((((((...(((..(((...))).)))...))))))....)))))).))))))))................................ (-16.73 = -17.28 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:01 2006