Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,636,557 – 8,636,676 |
Length | 119 |
Max. P | 0.975352 |
Location | 8,636,557 – 8,636,676 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.48 |
Mean single sequence MFE | -26.68 |
Consensus MFE | -8.22 |
Energy contribution | -9.10 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.17 |
Mean z-score | -2.24 |
Structure conservation index | 0.31 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975352 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8636557 119 + 20766785 UGUGCAUCCGAGUGAACCGCUGUGCACAGGGAAAGUAUUCCCAACUAAAGGAAUUUAUCAGAAUAUAUUAACU-UAAAUUUAAAUAUAUCUAUGAAACGUAGUUUUGCGAAAGCAAUUUC (((((((.((.(....)))..)))))))(((((....)))))(((((......(((((.(((.((((((....-........))))))))))))))...)))))((((....)))).... ( -28.40) >DroSec_CAF1 16705 119 + 1 UGUGCAUCCGAGUGAACCACGAUGCACAGGGAAAGUAUUCCCAACUAAAGGAAUUUAUCAGAAUAUAUUAACU-UGAAUUUAAAUAUAACUAGAUAACGUAGUUUUGCGAAAGCAAUUUC ((((((((...(....)...))))))))(((((....)))))(((((.......(((((((..((((((....-........)))))).)).)))))..)))))((((....)))).... ( -27.90) >DroSim_CAF1 20411 119 + 1 UGUGCAUCCGAGUGAACCUCGGUGCACAGGGAAAGUAUUCCCAACUAAAGGAAUUUAUCAGAAUAUAUUAACU-UGAAUUUAAACAUAACUAGGAAACGUAGUUUUGCGAAAGCAAUUUA ((((((.(((((.....)))))))))))(((((....)))))........(((((((................-)))))))......((((((....).)))))((((....)))).... ( -34.59) >DroEre_CAF1 16599 113 + 1 UGUGCAUCCGAGUGAAGCGCUGUGCACAGGAAAAG-----CAAAGGGCAUAAAUUUAUUAGAAUAUAUAGUCUUUAAAAUUGCACCUAUCUAUGAAGCUCAGCU--UGGACAGCAAUUCA ..(((.(((((((..((((((...(....)...))-----)..((((((....((((..(((........))).))))..))).))).........)))..)))--))))..)))..... ( -27.20) >DroYak_CAF1 16657 104 + 1 UGUGCAUCCGAGUGAACAUCAGUGCAUAGGGAAAGUAUACCAAACUAAACAAAUUUGCUAGAAUAUG-----UUUAAUAUUAAAAC-----AUAAACU----UU--UAGAAUGCAAUUUA (((((((..(((....).)).)))))))((.........))................((((((((((-----(((.......))))-----)))...)----))--)))........... ( -15.30) >consensus UGUGCAUCCGAGUGAACCGCGGUGCACAGGGAAAGUAUUCCCAACUAAAGGAAUUUAUCAGAAUAUAUUAACU_UAAAUUUAAACAUAACUAUGAAACGUAGUUUUGCGAAAGCAAUUUA (((((((..............)))))))(((((....))))).............................................................................. ( -8.22 = -9.10 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:00 2006