Locus 2392

Sequence ID 2R_DroMel_CAF1
Location 8,629,564 – 8,629,655
Length 91
Max. P 0.542000
window3957

overview

Window 7

Location 8,629,564 – 8,629,655
Length 91
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 82.79
Mean single sequence MFE -26.98
Consensus MFE -19.57
Energy contribution -20.60
Covariance contribution 1.03
Combinations/Pair 1.06
Mean z-score -1.48
Structure conservation index 0.73
SVM decision value 0.02
SVM RNA-class probability 0.542000
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8629564 91 + 20766785
-----CCUCGGACCAGCUUC----------CAAGUGCCCCACCCUAAGGGUGGACCACAACCUUCGGCGGGUAAGGUCUGA--UACUUCCCUGCGAAUGAAAAGUUAA
-----..(((((((......----------...(((..((((((...))))))..))).((((.....))))..)))))))--......................... ( -27.70)
>DroSec_CAF1 9142 91 + 1
-----CCUCGGACCAGCUUC----------CAAGUGCCCCACCCUGAGGGUGGACCACAACCUUCGGCGGGUAAGGUCUGA--UACUUCCCUGCCAAUGAAAAGUUAA
-----....(((......))----------)..(((..((((((...))))))..))).......((((((.(((......--..))).))))))............. ( -30.50)
>DroSim_CAF1 9102 91 + 1
-----CCUCGGACCAGCUUC----------CAAGUGCCCCACCCUAAGGGUGGACCACAACCUUCGGCGGGUAAGGUCUGA--UACUUCCCUGCGAAUGAAAAGUUAA
-----..(((((((......----------...(((..((((((...))))))..))).((((.....))))..)))))))--......................... ( -27.70)
>DroEre_CAF1 9712 90 + 1
-----CCUCGGACCAGCUUC----------CCAGUGCCCCACCCUAAGGGUGGACCACAACCUUCGGCGGGUACGGUCUG---CAUUUCCCUGCGAAUGAAAAGUUAA
-----...((((((.....(----------((.(((..((((((...))))))..)))...(....).)))...))))))---(((((......)))))......... ( -28.40)
>DroYak_CAF1 9736 82 + 1
-----CUUCGGACCAGCUUC----------CAAGUGCCCCACCCUAAGGGUGGACCACAACCUUCG---------GUCUGA--UACUUCCCUGCGAAUGAAAAGUUAA
-----..(((((((.(....----------)..(((..((((((...))))))..))).......)---------))))))--......................... ( -22.30)
>DroAna_CAF1 9797 103 + 1
GCCCCCUUCGGACCAGCUUUCCCCUCCGCCCAUGCAUCCCAU-CUCAGGGUGGACCUCAACCUUCUGCGG---UGGUCUGAGAAAUUUCCCUGCAAAUGAAAA-UUAA
......(((((((((.........(((((((...........-....)))))))((.((......)).))---))))))))).....................-.... ( -25.26)
>consensus
_____CCUCGGACCAGCUUC__________CAAGUGCCCCACCCUAAGGGUGGACCACAACCUUCGGCGGGUAAGGUCUGA__UACUUCCCUGCGAAUGAAAAGUUAA
.......(((((((...................(((..((((((...))))))..)))..((......))....)))))))........................... (-19.57 = -20.60 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:55 2006