Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,627,098 – 8,627,258 |
Length | 160 |
Max. P | 0.922354 |
Location | 8,627,098 – 8,627,194 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 78.83 |
Mean single sequence MFE | -26.37 |
Consensus MFE | -19.36 |
Energy contribution | -19.95 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.09 |
Mean z-score | -1.85 |
Structure conservation index | 0.73 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922354 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8627098 96 + 20766785 CUGGAAUUUGAUUUUAACGCUUAUUCGAGAGCUUGGGAUCUGUUCUGGUUCUGAGUCUCUGUUUGUGGCACCAGCCACUGACAACCAUCACGAAGG (..((((..((((((((.((((......)))))))))))).))))..)((((((.....((((.(((((....))))).))))....))).))).. ( -30.20) >DroSec_CAF1 6712 96 + 1 CUGGAAUUUGAUUUUAACGCUUAUUCGAGAGCUUGGGAUCUGUUCUGGUUCUGAGUCUCUGUUUGUGGCACCAGCCACUGACAACCAUCACUGAGG (..((((..((((((((.((((......)))))))))))).))))..)..((.(((...((((.(((((....))))).))))......))).)). ( -29.70) >DroSim_CAF1 6684 96 + 1 CUGGAAUUUGAUUUUAACGCUUAUUCGAGAGCUUGGGAUCUGUUCUGGUCCUGAGUCUCUGUUUGUGGCACCAGCCACUGACAACCAUCACCGAGG .(((......................((((.((..(((((......)))))..))))))((((.(((((....))))).)))).)))......... ( -32.00) >DroEre_CAF1 7308 76 + 1 CUGGAAUUUGAUUUUAACGCUUAUUCGAGAGCUUGGGAUCU-------------------GUUUGUGGCACCAGCCACUGACAACCAUCACCA-GG ((((.....((((((((.((((......))))))))))))(-------------------(((.(((((....))))).)))).......)))-). ( -26.70) >DroYak_CAF1 7259 77 + 1 CUGGAAUUUGAUUUUAACGCUUAUUCGAGAGCUUGGGAUCU-------------------GUUUGUGGCACCAGCCACUGACAACCAUCACCAAGG .(((.....((((((((.((((......))))))))))))(-------------------(((.(((((....))))).)))).......)))... ( -23.70) >DroAna_CAF1 7385 74 + 1 UCGGAAUUUGAUUUUAACGCUUCUCUGUGAGUUUGGGAUCUGU-----------GCCUCUGUUUGUGGCAGAA-------ACAACCGUCGCC---- .(((.....((((((((.((((......))))))))))))(.(-----------(((.(.....).)))).).-------....))).....---- ( -15.90) >consensus CUGGAAUUUGAUUUUAACGCUUAUUCGAGAGCUUGGGAUCUGU___________GUCUCUGUUUGUGGCACCAGCCACUGACAACCAUCACCAAGG .(((.....((((((((.((((......))))))))))))....................(((.(((((....))))).)))..)))......... (-19.36 = -19.95 + 0.59)
Location | 8,627,159 – 8,627,258 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 86.96 |
Mean single sequence MFE | -37.62 |
Consensus MFE | -28.69 |
Energy contribution | -28.90 |
Covariance contribution | 0.21 |
Combinations/Pair | 1.13 |
Mean z-score | -1.77 |
Structure conservation index | 0.76 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.735141 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8627159 99 - 20766785 GGUGCGGGCUUUCCGGGGUGAAGU-UUCCUGGUGCCGAGUUUAAUUCGCCUGCCAGUUGCUCCUGCCUUCGUGAUGGUUGUCAGUGGCUGGUGCCACAAA (((((.(((...((((((......-.)))))).)))((((...))))))..((((((..((...(((........)))....))..)))))))))..... ( -36.70) >DroSec_CAF1 6773 99 - 1 GGGGCUAUGCUUCCGGGGUGAAGU-UUCCUGGUGCUGAGUUUAAUUCGGCUGCCAGUUGCUCCUGCCUCAGUGAUGGUUGUCAGUGGCUGGUGCCACAAA .(((((..((..((((((......-.)))))).))..))))).....(((.((((((..((...(((........)))....))..)))))))))..... ( -36.90) >DroSim_CAF1 6745 99 - 1 GGGGCUGGGUUUCCGGGGUGAAGU-UUCCUGGUGCUGAGUUUAAUUCGGCUGCCAGUUGCUCCUGCCUCGGUGAUGGUUGUCAGUGGCUGGUGCCACAAA ..(((...(((.((((((((.(((-...((((((((((((...))))))).)))))..)))..)))))))).)))....))).(((((....)))))... ( -40.50) >DroEre_CAF1 7350 85 - 1 GGG--------------GCGGAGUUCUCCUGGUGCUGGCUUUAAUUCGGCUGCCAGUUGCUCCUGCC-UGGUGAUGGUUGUCAGUGGCUGGUGCCACAAA .((--------------(((((((....((((((((((.......))))).)))))..))))).)))-)..((((....))))(((((....)))))... ( -36.40) >DroYak_CAF1 7301 100 - 1 GGGGUGGGGUUUCCGGGGUGAAGUUUUCCUGGUGCUGAGUUUAAUUCGGCUGCCAGUUGCUCCUGCCUUGGUGAUGGUUGUCAGUGGCUGGUGCCACAAA ...((((.....((((((........)))))).(((((((...))))))).((((((..((...(((........)))....))..)))))).))))... ( -37.60) >consensus GGGGCGGGGUUUCCGGGGUGAAGU_UUCCUGGUGCUGAGUUUAAUUCGGCUGCCAGUUGCUCCUGCCUUGGUGAUGGUUGUCAGUGGCUGGUGCCACAAA ..............((((((.(((....((((((((((((...))))))).)))))..))).).)))))..((((....))))(((((....)))))... (-28.69 = -28.90 + 0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:54 2006