Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,626,985 – 8,627,081 |
Length | 96 |
Max. P | 0.728045 |
Location | 8,626,985 – 8,627,081 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 80.78 |
Mean single sequence MFE | -35.47 |
Consensus MFE | -21.64 |
Energy contribution | -24.36 |
Covariance contribution | 2.72 |
Combinations/Pair | 1.11 |
Mean z-score | -1.98 |
Structure conservation index | 0.61 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8626985 96 + 20766785 ----GGGAAUGAGGGGAGCAGCCAGCGGAAGCCGAGGCUGAAAAGUUCCCAAAUUUGGCAGACA-----GACCCCUUUCUGGCCAUCUCGUUCCCACUUUCAGCC ----(((((((((((((((((((.((....))...)))).....)))))).....(((((((.(-----(....)).))).)))).))))))))).......... ( -42.30) >DroSec_CAF1 6594 101 + 1 ----GGGAUUGAGGGGAGUAGCCAGCGGAAGCCGAGGCUGAAAAGUUCCCAAAUUUGGCAGACAGACCAGACCCCUUUCUGGCCAUCUCGUUCCCACUUCCAGCC ----((((.((((((((((((((.((....))...))))).....))))).....(((((((.((.........)).))).)))).)))).)))).......... ( -35.50) >DroSim_CAF1 6567 100 + 1 ----GGGAUUGAGGGG-GCAGCCAGCGGAAGCCGAGGCUGAAAAGUUCCCAAAUUUGGCAGACAGAACAGACCCCUUUCUGGCCAUCUCGUUCCCACUUCCAGCC ----((((.((((..(-((.((((((....)).(..(((....)))..)......))))...(((((.((....))))))))))..)))).)))).......... ( -38.30) >DroEre_CAF1 7195 96 + 1 ----GGGACUGAGGGGAGCAGCCAGCGGAAGCCGAGGCUGAAAAGUUGCCAAAUUUGGUAGACA-----GACCCCUUUCUGGCCAUCUCGUUCCCACCUCCAGCC ----((((.(((((((..(((((.((....))...))))).....((((((....)))))).((-----((......)))).)).))))).)))).......... ( -34.70) >DroYak_CAF1 7146 96 + 1 ----GGGAAUGAGGGGAGCAGCCAGCGGAAGCCGAGGCUGAAAAGUUCCCAAAUUUGGUAGACA-----GACCCCUUUCUGGCCACCUCGUUCCCACUUUCAGCC ----(((((((((((((((((((.((....))...)))).....)))))).....(((((((.(-----(....)).))).)))).))))))))).......... ( -40.40) >DroAna_CAF1 7275 82 + 1 GACCAGGACUGCCAGG-ACAGCCGGCGGAAACAGAGGCUGAA-AGUUCCCAAAUUCAGCACACA-----GACCUCCGUC----------------CUUUGAAGCC ....(((((.(((.((-....)))))(....).(((((((..-.(((.........)))...))-----).)))).)))----------------))........ ( -21.60) >consensus ____GGGAAUGAGGGGAGCAGCCAGCGGAAGCCGAGGCUGAAAAGUUCCCAAAUUUGGCAGACA_____GACCCCUUUCUGGCCAUCUCGUUCCCACUUCCAGCC ....((((.((((((((((((((.((....))...))))).....))))).....(((((((...............))).)))).)))).)))).......... (-21.64 = -24.36 + 2.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:52 2006