Locus 239

Sequence ID 2R_DroMel_CAF1
Location 1,612,132 – 1,612,233
Length 101
Max. P 0.997620
window518

overview

Window 8

Location 1,612,132 – 1,612,233
Length 101
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 74.29
Mean single sequence MFE -19.27
Consensus MFE -17.56
Energy contribution -16.57
Covariance contribution -0.99
Combinations/Pair 1.21
Mean z-score -1.47
Structure conservation index 0.91
SVM decision value 2.90
SVM RNA-class probability 0.997620
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1612132 101 + 20766785
UACCUUGGCAGAAGAAUGGGCUUAGGUAGAUUUUUAAUUUUCCGUUAAAUGUUAUACUCAACAUUCAGGUGAAAAGUCCCAGUUACCUGCUAAUGGCAAUA
..(((((((((.....(((((((.((.((((.....)))).))....((((((......))))))........))).)))).....))))))).))..... ( -23.00)
>DroSec_CAF1 21817 78 + 1
UGCCUUGGCAGAAGAAUGGGCUAAGGUAGACUUUUAAGUUUCUUUAAAAUGUUAUACUCAAUAUUCAAGUGAAAAGUC-----------------------
(((((((((..........)))))))))(((((((......(((...((((((......)))))).)))..)))))))----------------------- ( -17.00)
>DroSim_CAF1 18275 78 + 1
UGCCUUGGCAGAAGAAUGGGCUAAGGUAGACUUUUCAGUUUCUUUAAAGUGUUAUACCCAACAUUCAAGUUAAAAGUC-----------------------
(((((((((..........)))))))))(((((((......(((...((((((......)))))).)))..)))))))----------------------- ( -17.80)
>consensus
UGCCUUGGCAGAAGAAUGGGCUAAGGUAGACUUUUAAGUUUCUUUAAAAUGUUAUACUCAACAUUCAAGUGAAAAGUC_______________________
(((((((((..........)))))))))(((((((......((....((((((......))))))..))..)))))))....................... (-17.56 = -16.57 +  -0.99) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:15 2006