Locus 2388

Sequence ID 2R_DroMel_CAF1
Location 8,621,334 – 8,621,430
Length 96
Max. P 0.972914
window3951

overview

Window 1

Location 8,621,334 – 8,621,430
Length 96
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 76.79
Mean single sequence MFE -26.26
Consensus MFE -8.94
Energy contribution -9.98
Covariance contribution 1.04
Combinations/Pair 1.06
Mean z-score -2.39
Structure conservation index 0.34
SVM decision value 1.70
SVM RNA-class probability 0.972914
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8621334 96 - 20766785
ACAAGUGGAAAACACUAAAUAGUUGCAGCAG---------UUGCAGGACAAAGGAUAAACCGGAGUAAAAGCUGC----------AGCCGAGUGCCAAAGUUCACACCAACCCCA----
....(((((...((((.....((((((((..---------((((.((............))...))))..)))))----------)))..))))......)))))..........---- ( -24.50)
>DroSec_CAF1 989 100 - 1
ACAAGUGGAAAGCACUAAAUAGUUGCAGCAG---------UUGCAGGACAAAGGAUAAACCGGAGUAAAAGCUGC----------AGCCGAGUGCCAAAGUUCACACCAACCCCAACCU
....(((((..(((((.....((((((((..---------((((.((............))...))))..)))))----------)))..))))).....))))).............. ( -28.10)
>DroSim_CAF1 948 100 - 1
ACAAGUGGAAAGCACUAAAUAGUUGCAGCAG---------UUGCAGGACAAAAGAUAAACCGGAGUAAAAGCUGC----------AGCCGAGUGCCAAAGUUCACACCAACCCNNNNNN
....(((((..(((((.....((((((((..---------((((.((............))...))))..)))))----------)))..))))).....))))).............. ( -28.10)
>DroYak_CAF1 1256 105 - 1
ACAAGUGGAAAGCACUAAAUAGUUGCAGCAGUGGCCGGAGUUGCAGGACGAAGGAUAAACUGGAGAAAAAGCUGC----------AGCCGAGUGCCAAAGUUCACACCAACCCCA----
....(((((..(((((.....((((((((.(..((....))..)....(....)................)))))----------)))..))))).....)))))..........---- ( -29.50)
>DroAna_CAF1 1437 90 - 1
ACGAGUGGAAAGCACUAAAUAGUGGCA------------------------AGGAUAAGCACGGG-AAAAGCUACUGCUGCACACAACAGAGUGCCAAAGUUCUCGCCAAACCUC----
...((((.....))))......((((.------------------------(((((.((((..((-.....))..))))((((........))))....))))).))))......---- ( -21.10)
>consensus
ACAAGUGGAAAGCACUAAAUAGUUGCAGCAG_________UUGCAGGACAAAGGAUAAACCGGAGUAAAAGCUGC__________AGCCGAGUGCCAAAGUUCACACCAACCCCA____
....(((((..(((((.....((((((((.........................................)))))..........)))..))))).....))))).............. ( -8.94 =  -9.98 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:49 2006