Locus 2387

Sequence ID 2R_DroMel_CAF1
Location 8,620,643 – 8,620,735
Length 92
Max. P 0.649206
window3950

overview

Window 0

Location 8,620,643 – 8,620,735
Length 92
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 65.38
Mean single sequence MFE -23.58
Consensus MFE -10.98
Energy contribution -11.86
Covariance contribution 0.88
Combinations/Pair 1.29
Mean z-score -1.66
Structure conservation index 0.47
SVM decision value 0.24
SVM RNA-class probability 0.649206
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8620643 92 + 20766785
AGACCACCAGAAACACCAAAUAGUGGAGAACUCCUUUCGUCUGGGCAGGAAAAUCUUUGAGAAGUUCCAUGCCAAAAGAAAGUCCUUACGAC-------------------------
.(((...((((..(((......)))((((.....)))).))))((((((((..((.....))..)))).))))........)))........------------------------- ( -21.10)
>DroSec_CAF1 228 92 + 1
AGACCACCAGAUGCGCCACAUGGCAGAGAACUCCUUUCAUCUGGGCAGGAAAAUCUUUGAGAAGUUCCAUGCCAAAAGAAAGUCCCUACAAC-------------------------
.(((...((((((.(((....)))((((.....))))))))))((((((((..((.....))..)))).))))........)))........------------------------- ( -26.40)
>DroSim_CAF1 258 117 + 1
AGACCACCAGAUGGGCCACGUGGUAGAGAACUCCUUUCAUCUGGGCAGGAAAAUCUUUGAGAAGUUCCAUUCCCAAAGAAAUUCCCUACGACNNNNNNNNNNNNNNNNNNNNNNNNN
......(((((((((((....))).(((.....)))))))))))...((((..((((((.(((......))).))))))..))))................................ ( -26.00)
>DroEre_CAF1 913 74 + 1
GGAU------UUGCGCCAAAUGGCAGAGCAUUCCUGUCGUCUGGGCAGGAAAAUUCUUGAGAAGUUCAGUGCCAACAACG-------------------------------------
((..------..(((((....))).((((.((((((((.....))))))))..(((....))))))).)).)).......------------------------------------- ( -22.90)
>DroYak_CAF1 504 86 + 1
GGAU------UUGCGCCAAAUGGCAGAGCAUUCCCGUCGUCUGGGCAGGAAAAUUCUGGAAAAGUUCAGUGCCAAAUACAAGGCCGUACGAA-------------------------
((((------((..(((....)))((((..((((.(((.....))).))))..))))....)))))).(.(((........)))).......------------------------- ( -21.50)
>consensus
AGACCACCAGAUGCGCCAAAUGGCAGAGAACUCCUUUCGUCUGGGCAGGAAAAUCUUUGAGAAGUUCCAUGCCAAAAGAAAGUCCCUACGAC_________________________
((((..........(((....))).((((.....)))))))).((((((((..((.....))..)))).))))............................................ (-10.98 = -11.86 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:48 2006