Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,619,322 – 8,619,423 |
Length | 101 |
Max. P | 0.761412 |
Location | 8,619,322 – 8,619,423 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.88 |
Mean single sequence MFE | -28.78 |
Consensus MFE | -12.72 |
Energy contribution | -13.00 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.43 |
Mean z-score | -1.90 |
Structure conservation index | 0.44 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761412 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8619322 101 + 20766785 --------------AUUGGGGGUUUGUCCAAC----CAAUCCCCG-AAUUCAGAUUGGGGACACAUGCAAACGGCUGAAAGCUAUAAAAUCUUUCACCAAAGAAGUUUCCGAGUUCCGAG --------------.(((((((((.(.....)----.))))))))-)..((.((((((..((..........(((.....)))......(((((....))))).))..))))..)).)). ( -25.80) >DroSec_CAF1 21586 98 + 1 --------------AUCGGGGGUUUGUCCAAG----CAAUCCCCA-AAUUCAGAUUGGGGACACAUGCAAACGGCUGAAAGCUAUAAAAUCUUUCACCAAAGAAGUUUCCGAGUUC---G --------------.(((((..(((......(----((.((((((-(.......)))))))....)))....((.((((((.........))))))))....)))..)))))....---. ( -27.40) >DroSim_CAF1 18917 98 + 1 --------------AUUGGGAGUUUGUCCAAG----CAAUCCCCA-AAUUCAGAUUGGGGACACAUGCAAACGGCUGAAAGCUAUAAAACCUUUCACCAAAGAAGUUUCCGAGUUC---G --------------.((((((((((((.....----...((((((-(.......))))))).....))))))((.((((((.........))))))))........))))))....---. ( -26.22) >DroEre_CAF1 19507 111 + 1 GGUCCUGUGGAUACAUCGCAGGA-C-CCCAGGCCCACAAGCCUCC-AUUUCGAAGUGGAGACACAUUGAGCCGGCUAAGAGCAAUAAAAGCGUUUGCCAAGAAAGUCUCC---UUU---G ((((((((((.....))))))))-)-)...(((..((.((((...-..(((((.(((....))).)))))..))))....((.......))))..)))............---...---. ( -36.40) >DroYak_CAF1 15084 98 + 1 --------------AUUGCGGGU-UGUCCAAG----CAAUCCCCAAAAUCCGAAAUGGGGACACAUGCAAACGGCUGAAAGCAAUAAAAUCUUUCAGCAAAGAAGUUUCCGACUUC---G --------------.(((((((.-...))...----...((((((..........))))))....)))))...((((((((.........))))))))...((((((...))))))---. ( -28.10) >consensus ______________AUUGGGGGUUUGUCCAAG____CAAUCCCCA_AAUUCAGAUUGGGGACACAUGCAAACGGCUGAAAGCUAUAAAAUCUUUCACCAAAGAAGUUUCCGAGUUC___G ...............(((((((.................((((((..........))))))...........((.((((((.........)))))))).......)))))))........ (-12.72 = -13.00 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:47 2006