Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,616,462 – 8,616,582 |
Length | 120 |
Max. P | 0.524528 |
Location | 8,616,462 – 8,616,582 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.08 |
Mean single sequence MFE | -34.83 |
Consensus MFE | -33.97 |
Energy contribution | -34.23 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.46 |
Structure conservation index | 0.98 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524528 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8616462 120 + 20766785 CACAACGUUCUACAUCCGGAAAACCCACGGGGAUGGGGCUACAAGCUUCUAAUUGAGCGUGCACUGGGCGCUUCUAAUUAUCGCACGAAGCGAACAGUUUCCCAUUUCCAAUUUCGAUCC .....((..........((.....))..((..(((((((.....((((......))))..))((((..((((((............))))))..))))..)))))..)).....)).... ( -35.40) >DroSec_CAF1 18769 120 + 1 CACAACCUUCUACACCCGGAAAACCCACGGGGAUGGGGCUACAAGCUUCUAAUUGAGCGUGCACUGGGCGCUUCUAAUUAUCGCACGAAGCGAACAGUUUCCCAUUUCCCAUUUCGAUCC .................((.....))..((..(((((((.....((((......))))..))((((..((((((............))))))..))))..)))))..))........... ( -34.40) >DroEre_CAF1 16604 120 + 1 CACAACCUUCUACACCCGGGAAACCCACGGGGAUGGGGCUACAAGCUUCUAAUUGAGCGUGCACUGGGCGCUUCUAAUUAUCGCACGAAGCGAACAGUUUCCCAUUUCCCAUUUCGAUCC .................((....))...((..(((((((.....((((......))))..))((((..((((((............))))))..))))..)))))..))........... ( -37.40) >DroYak_CAF1 12267 119 + 1 CACAACCUUCUGCGCCCGGAAAACCCACGGGGAUGGGGCUACAAGCUUCUAAUUGAGCGUGCACUGGGCGCUUCUAAUUAUCGCACGA-GCGAACAGUUUCCCAUUUCCCAUUUCGAUCC .......(((((....))))).......((..(((((((.....((((......))))..))((((..(((((.............))-)))..))))..)))))..))........... ( -32.12) >consensus CACAACCUUCUACACCCGGAAAACCCACGGGGAUGGGGCUACAAGCUUCUAAUUGAGCGUGCACUGGGCGCUUCUAAUUAUCGCACGAAGCGAACAGUUUCCCAUUUCCCAUUUCGAUCC .................((.....))..((..(((((((.....((((......))))..))((((..((((((............))))))..))))..)))))..))........... (-33.97 = -34.23 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:40 2006