Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,615,766 – 8,615,877 |
Length | 111 |
Max. P | 0.884534 |
Location | 8,615,766 – 8,615,877 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.51 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -24.76 |
Energy contribution | -24.96 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.30 |
Structure conservation index | 0.94 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884534 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8615766 111 + 20766785 AGUGGAAAAAUAUGCAAAUUGUUUUUGGCUCAUGUCAGACAUAAACUUUUUUAUGGCCCAGUGACAUGUUAUAGUGAGCCCUCCGGCUCAUGCCCCUAAUCCCAAGACCCC--------- ..((((((((((.......)))))))(((.(((((((..((((((....))))))......))))))).....(((((((....)))))))))).......))).......--------- ( -28.80) >DroSec_CAF1 18090 111 + 1 AGUGGAAAAAUAUGCAAAUUGUUUUUGGCUCAUGUCAGACAUAAACUUUUUUAUGGCCCAGUGACAUGUUAUAGUGAGCCCUCCGGCUCCUGCCCCUAAUCCCAAUCCCCC--------- ..((((((((((.......)))))))(((.(((((((..((((((....))))))......)))))))....((.(((((....)))))))))).......))).......--------- ( -26.80) >DroSim_CAF1 14682 111 + 1 AGUGGAAAAAUAUGCAAAUUGUUUUUGGCUCAUGUCAGACAUAAACUUUUUUAUGGCCCAGUGACAUGUUAUAGUGAGCCCUCCGGCUCCUGCCCCUAAUCCCAAUCCCCC--------- ..((((((((((.......)))))))(((.(((((((..((((((....))))))......)))))))....((.(((((....)))))))))).......))).......--------- ( -26.80) >DroEre_CAF1 15907 114 + 1 AGUGGAAAAAUAUGCAAAUUGUUUUUGGCUCAUGUCAGACAUAAACUUUUUUAUGGCCCAGUGACAUGUUAUAGUGAGCCCUCCGGCUCCUGCCCCUAAUCCCAAACCCCCGGU------ ..((((((((((.......)))))))(((.(((((((..((((((....))))))......)))))))....((.(((((....)))))))))).......)))..........------ ( -26.80) >DroYak_CAF1 11537 120 + 1 AGUGGAAAAAUAUGCAAAUUGUUUUUGGCUCAUGUCAGACAUAAACUUUUUUAUGGCCCAGUGACAUGUUAUAGUGCGCCCCUCGGCUCCUGCCUCUAAUCCCAAUCCCCCAAUCCCCCU ..((((((((((.......)))))))(((.(((((((..((((((....))))))......)))))))....((.(.(((....))).)))))).......)))................ ( -22.70) >consensus AGUGGAAAAAUAUGCAAAUUGUUUUUGGCUCAUGUCAGACAUAAACUUUUUUAUGGCCCAGUGACAUGUUAUAGUGAGCCCUCCGGCUCCUGCCCCUAAUCCCAAUCCCCC_________ ..((((((((((.......)))))))(((.(((((((..((((((....))))))......))))))).......(((((....)))))..))).......)))................ (-24.76 = -24.96 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:39 2006