Locus 2377

Sequence ID 2R_DroMel_CAF1
Location 8,612,606 – 8,612,713
Length 107
Max. P 0.844231
window3931

overview

Window 1

Location 8,612,606 – 8,612,713
Length 107
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 90.94
Mean single sequence MFE -23.52
Consensus MFE -21.94
Energy contribution -22.12
Covariance contribution 0.19
Combinations/Pair 1.07
Mean z-score -1.60
Structure conservation index 0.93
SVM decision value 0.76
SVM RNA-class probability 0.844231
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8612606 107 - 20766785
--GUA-AAAAAAGUGAGUUGAAUAAUAUAGCUAAACAGGCAUCUCUGGCGCCACCACCUUGAAUGUUACCAAAUCGCUUUAGCUCCGCCACAAGGAGCAAUAAAAAUGAU
--...-...(((((((.(((..((((((.(((.....))).....(((.....)))......)))))).))).))))))).(((((.......)))))............ ( -23.20)
>DroSim_CAF1 10368 110 - 1
UUAUACAAAAAAGCGAAUUGAAUAUUAUAGCUAAACUGGCAUCUCUGGCGCCACCACCUUGAAUGUUACCAAAUCGCUUUAGCUCCGCCACAAGGAGCAAUAAAAAUGAU
.........(((((((.(((((((((..........((((.........))))........))))))..))).))))))).(((((.......)))))............ ( -24.77)
>DroEre_CAF1 12830 107 - 1
--GCA-GGAAAAGCGAGUUGAAUGUUAUAGCUAAACCGGCAUCUCUGGCGCCACCACCUUGAACGUUACCAAAUCGCUUUAGCUCCGCCACAAGGAGCAAUAAAAAUGAU
--...-...(((((((.(((((((((...(((.....))).....(((.....))).....))))))..))).))))))).(((((.......)))))............ ( -25.90)
>DroYak_CAF1 8331 105 - 1
--ACA---AAAAGCUAGUUUAAUAUUACAGCUUAACAGGCAUCUCUGGCGCCACCACCUUGAAUGUUACCAAAUCGCUUUAGCUCCGCCACAAGGAGCAAUAAAAAUGAU
--...---.(((((..((........))....(((((..((....(((.....)))...))..))))).......))))).(((((.......)))))............ ( -20.20)
>consensus
__ACA_AAAAAAGCGAGUUGAAUAUUAUAGCUAAACAGGCAUCUCUGGCGCCACCACCUUGAAUGUUACCAAAUCGCUUUAGCUCCGCCACAAGGAGCAAUAAAAAUGAU
.........(((((((.(((((((((...(((.....))).....(((.....))).....))))))..))).))))))).(((((.......)))))............ (-21.94 = -22.12 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:30 2006