Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,612,404 – 8,612,504 |
Length | 100 |
Max. P | 0.659662 |
Location | 8,612,404 – 8,612,504 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.28 |
Mean single sequence MFE | -38.20 |
Consensus MFE | -30.98 |
Energy contribution | -31.22 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.49 |
Structure conservation index | 0.81 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659662 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8612404 100 + 20766785 GCAAAGGAUUCCACGCCCGCUGUUGCC-CAACAUUGGCAACAUUGUGGC-------------------UCGAGUGCUCGUCCCAGCGGGCAGCUGCUCUUUCCCACGUGCAUCAUUCGAG (((..(((......(((((.(((((((-.......))))))).)).)))-------------------..(((((((.((((....))))))).))))..)))....))).......... ( -34.80) >DroSec_CAF1 13300 100 + 1 GCAAAGGAUUCCACGCCCGCUGUUGCC-CAACAUUGGCAACAUUGUGGC-------------------UCGAGUGCUCGUCCCAGCGGGCAGCUGCUCUUUCCCACGUGCAUCAUUCGAG (((..(((......(((((.(((((((-.......))))))).)).)))-------------------..(((((((.((((....))))))).))))..)))....))).......... ( -34.80) >DroSim_CAF1 10166 100 + 1 GCAAAGGAUUCCACGCCCGCUGUUGCC-CAACAUUGGCAACAUUGUGGC-------------------UCGAGUGCUCGUCCCAGCGGGCAGCUGCUCUUUCCCACGUGCAUCAUUCGAG (((..(((......(((((.(((((((-.......))))))).)).)))-------------------..(((((((.((((....))))))).))))..)))....))).......... ( -34.80) >DroEre_CAF1 12609 119 + 1 GCAAAGGAUUCCACGCCCGCUGUUGCC-CAACAUUGGCAACAUUGUGGCCGGAUCCCCCUGCCUGCAGUCGAGUGCUCCUCGCAGCGGGCAGCUGCUCUUUCCCACGUGCAUCAUUCGAG (((..((((((...(((((.(((((((-.......))))))).)).))).))))))..((((((((.(.((((.....))))).))))))))...............))).......... ( -45.10) >DroYak_CAF1 8108 114 + 1 GCAAAGGAUUCCACGCUCGCUGUUGCCCCAACAUUGGCAACAUUGUGGCCGGAACC------CUGCACUCGAGUGCUCGUCCCAGCGGGCAGCUGCUCUUUCCCACGUGCAUCAUUCGAG (((..((.((((..((.((((((((((........)))))))..))))).)))).)------)))).(((((((((((((....)))))).(.(((.(........).))).)))))))) ( -41.50) >consensus GCAAAGGAUUCCACGCCCGCUGUUGCC_CAACAUUGGCAACAUUGUGGC___________________UCGAGUGCUCGUCCCAGCGGGCAGCUGCUCUUUCCCACGUGCAUCAUUCGAG (((..(((......(((((.(((((((........))))))).)).))).....................(((((((.((((....))))))).))))..)))....))).......... (-30.98 = -31.22 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:29 2006