Locus 2374

Sequence ID 2R_DroMel_CAF1
Location 8,611,677 – 8,611,797
Length 120
Max. P 0.903964
window3924

overview

Window 4

Location 8,611,677 – 8,611,797
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.50
Mean single sequence MFE -31.00
Consensus MFE -30.70
Energy contribution -30.54
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -1.41
Structure conservation index 0.99
SVM decision value 1.03
SVM RNA-class probability 0.903964
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8611677 120 + 20766785
AAAAUCUGCGAGACGACAGCUCCGGCAACAACUCAAUGCCAUACACAAUAUGAAGUCAUAAAACGGAAGGAAGCCCAACGAAACGGAGCGAAAAGUCGACAGUUUUCUGGCGGGGCAGCG
....(((((.(((.(((.(((((((((.........))))........((((....))))...((...((....))..))....)))))((....))....))).))).)))))...... ( -31.10)
>DroSec_CAF1 12629 120 + 1
AAAAUCUGCGAGACGACAGCUCCGGCAACAACUCAAUGCCAUACACAAUAUGAAGUCAUAAAACGGAAGGAAGCCCAACGAAACGGAGCGAAAAGUCGACAGUUUUCUGGCGGGGCAGCG
....(((((.(((.(((.(((((((((.........))))........((((....))))...((...((....))..))....)))))((....))....))).))).)))))...... ( -31.10)
>DroSim_CAF1 9442 120 + 1
AAAAUCUGCGAGACGACAGCUCCGGCAACAACUCAAUGCCAUACACAAUAUGAAGUCAUAAAACGGAAGGAAGCUCAACGAAACGGAGCGAAAAGUCGACAGUUUUCUGGCGGGGCAGCG
....(((((.(((.(((.(((((((((.........))))........((((....))))...((..((....))...))....)))))((....))....))).))).)))))...... ( -30.60)
>DroEre_CAF1 11904 119 + 1
AAAAUCUGCGAGACGACAGCUCCGGCAACAACUCAAUGCCAUACACAAUAUGAAGUCAUAAAACGGAAGGAAGCCCAACGAAACGGAGCGAAAAGUCGACAGUUUUCUGGCGGGAAAGC-
....(((((.(((.(((.(((((((((.........))))........((((....))))...((...((....))..))....)))))((....))....))).))).))))).....- ( -31.10)
>DroYak_CAF1 7355 119 + 1
AAAAUCUGCGAGACGACAGCUCCGGCAACAACUCAAUGCCAUACACAAUAUGAAGUCAUAAAACGGAAGGAAGCCCAACGAAACGGAGCGAAAAGUCGACAGUUUUCUGGCGGGGCAGC-
....(((((.(((.(((.(((((((((.........))))........((((....))))...((...((....))..))....)))))((....))....))).))).))))).....- ( -31.10)
>consensus
AAAAUCUGCGAGACGACAGCUCCGGCAACAACUCAAUGCCAUACACAAUAUGAAGUCAUAAAACGGAAGGAAGCCCAACGAAACGGAGCGAAAAGUCGACAGUUUUCUGGCGGGGCAGCG
....(((((.(((.(((.(((((((((.........))))........((((....))))...((...((....))..))....)))))((....))....))).))).)))))...... (-30.70 = -30.54 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:24 2006