Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,609,577 – 8,609,697 |
Length | 120 |
Max. P | 0.500000 |
Location | 8,609,577 – 8,609,697 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.60 |
Mean single sequence MFE | -26.66 |
Consensus MFE | -20.58 |
Energy contribution | -20.42 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.43 |
Structure conservation index | 0.77 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8609577 120 - 20766785 CUCUACAUCCACAUACAUUCGAAUUUGCAUAAUUGCAUCUGUCAUUGGCAUUGGCUUGCUGGCUACAAUUGCAUUGACCAUCGGCCACCCCCUUUGGAGCCCAGCCCCCUCCCCACUGCA ....................((...((((....))))....))....(((.(((...(((((((.((((...)))).(((..((......))..))))).))))).......))).))). ( -24.30) >DroSec_CAF1 10469 106 - 1 --CUACAUCCACACACAUUCGAAUUUGCAUAAUUGCAUCUGUCAUUGGCAUUGGCUUGCUGGCUGCAAUUGCAUUGACCAUCGGCCACCCACUUUGGAGCC------------CACUGCA --.....((((.........((...((((....))))....))..(((...(((((.(.(((((((....)))..).))).)))))).)))...))))((.------------....)). ( -22.70) >DroSim_CAF1 7314 113 - 1 --CUACAUCCACACACAUUCGCAUUUGCAUAAUUGCAUCUGUCAUUGGCAUUGGCUUGCUGGCUACAAUUGCAUUGACCAUCGGCCACCCACUUUGGAGCCCAGCCC-----CCACUGCA --.............((...(((..((((....))))..)))...))(((.(((...(((((((.((((...)))).(((..(........)..))))).)))))..-----))).))). ( -27.00) >DroEre_CAF1 9792 114 - 1 --CUACAUCCACACACAUUCGAAUUUGCAUAAUUGCAUCUGUCAUUGGCAUUGGCUUGCUGGCUACAACUGCACUGACCAUCGGCCACCCACUUUGGGGCCAGCCCC----CCUUUUGCA --..................((...((((....))))....))....(((..((...((((((..........(((.....)))...(((.....)))))))))...----))...))). ( -28.50) >DroYak_CAF1 5022 113 - 1 --CUACAUCCACACACAUU-GAAUUUGCAUAAUUGCAUCUGUCAUUGGCAUUGGCUUGCUGGCUACAAUUGCAUUGACCAGCGGCCACCCACUUUGGCGCCCAGCCG----CCCACUGCA --.............((.(-((...((((....))))....))).))(((.(((((.(((((...((((...)))).))))))))))........((((......))----))...))). ( -30.80) >consensus __CUACAUCCACACACAUUCGAAUUUGCAUAAUUGCAUCUGUCAUUGGCAUUGGCUUGCUGGCUACAAUUGCAUUGACCAUCGGCCACCCACUUUGGAGCCCAGCCC____CCCACUGCA .........................((((....((((..(((..(..(((......)))..)..)))..)))).........(((...((.....)).)))...............)))) (-20.58 = -20.42 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:15 2006