| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,601,387 – 1,601,489 |
| Length | 102 |
| Max. P | 0.559376 |
| Location | 1,601,387 – 1,601,489 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.18 |
| Mean single sequence MFE | -24.49 |
| Consensus MFE | -18.16 |
| Energy contribution | -18.35 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1601387 102 + 20766785 -----------------UCU-AACCCACCAUUAUACGCCUGAGAUCCUCUUCAGAUGGCUGCUCAUAGCCAUCCUGGUACCAAAUUAACUUGUAUAUAACGGCCAACUGAUUGUACGUUA -----------------...-..........(((((....(((...))).(((((((((((....))))))).))))..............)))))(((((..(((....)))..))))) ( -20.30) >DroVir_CAF1 15402 109 + 1 --------AUUGACA---UGCUACUUACCAUAAUACGCUUGAGAUCCUCUUCGGAUGGCUGCUCGUAGCCAUCCUGAUACCAAAUUAAUUUAUAUAUAACGGCCAAUUGAUUGAACGUUA --------.(((.((---.((...............)).))...........(((((((((....)))))))))......))).............(((((..(((....)))..))))) ( -22.06) >DroGri_CAF1 16091 112 + 1 --------AUCAAUGUCUGUGACCUUACCAUAAUACGCUUGAGAUCCUCUUCGGAUGGCUGCUCGUAGCCAUCCUGAUACCAAAUUAAUUUAUAUAUAACGGCCAACUGAUUGAACGUUA --------.(((((((.((((.......))))..))).))))..........(((((((((....)))))))))......................(((((..(((....)))..))))) ( -24.60) >DroWil_CAF1 15139 102 + 1 -----------------ACC-AGCUUACCAUAAUACGCUUGAGAUCCUCUUCGGAUGGCUGCUCAUAGCCAUCCUGAUACCAAAUUAAUUUAUAUAUAACGGCCAAUUGAUUGUACGUUA -----------------.(.-(((.((......)).))).)...........(((((((((....)))))))))......................(((((..(((....)))..))))) ( -20.70) >DroMoj_CAF1 13185 117 + 1 GAGCCGCGAUUCGUG---GAGGACUUACCAUAAUACGCUUGAGAUCCUCUUCGGAUGGCUGCUCAUAGCCAUCCUGAUACCAAAUUAAUUUAUAUAUAACGGCCAAUUGAUUGAACGUUA ((((.((.(((((.(---(((((((((............)))).)))))).))))).)).))))................................(((((..(((....)))..))))) ( -32.50) >DroAna_CAF1 14328 103 + 1 -----------------UCAGAACCUACCAUUAUACGCUUGAGAUCCUCUUCGGAUGGCUGCUCGUAGCCGUCCUGGUACCAAAUUAGUUUGUAUAUAACAGCCAACUGAUUGUACGUUA -----------------....(((.(((((..........(((...)))...(((((((((....))))))))))))))...((((((((.((........)).))))))))....))). ( -26.80) >consensus _________________UCAGAACUUACCAUAAUACGCUUGAGAUCCUCUUCGGAUGGCUGCUCAUAGCCAUCCUGAUACCAAAUUAAUUUAUAUAUAACGGCCAACUGAUUGAACGUUA ....................................................(((((((((....)))))))))......................(((((..(((....)))..))))) (-18.16 = -18.35 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:13 2006