| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,600,873 – 8,600,977 |
| Length | 104 |
| Max. P | 0.757774 |
| Location | 8,600,873 – 8,600,977 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.76 |
| Mean single sequence MFE | -34.17 |
| Consensus MFE | -20.24 |
| Energy contribution | -20.68 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.757774 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8600873 104 - 20766785 AUUUUCCUUGUUUAUGGCCAAACAUUUUGGUCACGUUCC-GGGGACGUGAGCAUUUUUAGGCAACUUUUC--GACGUGCUAUUGAAGUUGCCCCG---G-GAGACGAGGUG--------- .....((((((((.(((((((.....)))))))...(((-((.(.(....)).......(((((((((..--...........))))))))))))---)-)))))))))..--------- ( -36.42) >DroPse_CAF1 34915 113 - 1 AUUUUCCUUGUUUACGGCCAAACAUUUUGGUCACGUGCU-GGAUACGUGAGCAUUUUCGAGCAAGUUUCC--UACAGGAAGUGGAACUUCGACGG---A-GGAGUGCGGUGAGGGGGAAG .((..((((((((((((((((.....))))))..(((..-...)))))))))........(((..(((((--.....((((.....))))...))---)-))..)))...))))..)).. ( -33.60) >DroSim_CAF1 77164 104 - 1 AUUUUCCUUGUUUAUGGCCAAACAUUUUGGUCACGUUCC-GGGGACGUGAGCAUUUUUAGGCAACUUUUC--GACGUGCUAUCGAAGUUGCCCCG---G-GAGGCGAGGUG--------- .....((((((((.(((((((.....)))))))...(((-((.(.(....)).......(((((((..((--((.......))))))))))))))---)-)))))))))..--------- ( -37.30) >DroWil_CAF1 49474 105 - 1 AUUUUCCUUGUUUAUGGGCAAACAUUUUGGUCACGUUCCAUGGGUCGUGAGCAUUUUUGGGAAACUUUUGAAGAAGUGCAGAUGGAGAUGGAUGG---G-GAGAUGAAU----------- ..((((((..(((((.......(((((...(((((..(....)..)))))((((((((((....)).....)))))))))))))...)))))..)---)-)))).....----------- ( -29.20) >DroYak_CAF1 80331 102 - 1 AUUUUCCUUGUUUAUGGCCAAACAUUUUGGUCACGUGCC-UGGGACGUGAGCAUUUUUAGGCAACUUUUC--GACGUGCCAUCGAAGUUUCCCCA---G-GAGGCGAGG----------- .....((((((((.(((((((.....)))))))....((-((((.(....)........((((.(.....--...)))))...........))))---)-)))))))))----------- ( -32.80) >DroAna_CAF1 26786 108 - 1 AUUUUCCUUGUUUAUGGCCAAACAUUUUGGUCACGUGCC-UGGGACGUGAGCGUUUUUAGGCAACUUUCC--UACGUGGCGGAUAAGUUUGCGGGGCGGCAGGACGAGGCA--------- .....((((((((...(((((((...((.((((((((((-(((((((....)).))))))))........--.))))))).))...))))((...))))).))))))))..--------- ( -35.70) >consensus AUUUUCCUUGUUUAUGGCCAAACAUUUUGGUCACGUGCC_GGGGACGUGAGCAUUUUUAGGCAACUUUUC__GACGUGCAAUCGAAGUUGCCCCG___G_GAGACGAGGUG_________ .....((((((((...(((........((.((((((((....)))))))).))......)))((((((...............))))))............))))))))........... (-20.24 = -20.68 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:12 2006