Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,590,345 – 8,590,445 |
Length | 100 |
Max. P | 0.964946 |
Location | 8,590,345 – 8,590,445 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -37.42 |
Consensus MFE | -35.79 |
Energy contribution | -36.35 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.31 |
Structure conservation index | 0.96 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964946 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8590345 100 - 20766785 CCAUCUGCAGAUGCGACUGCCUCUGCUCCUUGGCUCCCUUUCAUGAUGAUAAAGGUGAUGAUGAUGGGGCUGAAGUGGAUGGUGGCUAGAUGUGCUGAUG .((((.(((.((.(..(..((((..((..(..(((((...((((.((.((....)).)).)))).)))))..)))..)).))..)...))).))).)))) ( -36.00) >DroSec_CAF1 66050 100 - 1 CCAUCUGCAGAUGCGGCUGCCUCUGCUUCUUGACUCCCUUUCAUGGUGAUAAAGGUGAUGAUGAUGGGGCUGAUGUGGAUGGUGGCUAGAUGUGCUGAUG .((((.(((.((..(((..((((..(.((......((((.((((.((.((....)).)).)))).))))..)).)..)).))..)))..)).))).)))) ( -37.60) >DroEre_CAF1 56555 100 - 1 CCAUCUGCAGAUGCGGCUGCCUCUGCUCCUUGGCUUCCUUUCAUGAUGAUAAAGGUGAUGAUGAUGGGGCUGAAGUGGAUGGUGGCUAGAUGUGCUGAUG .((((.(((.((..(((..((((..((..(..(((((...((((.((.((....)).)).)))).)))))..)))..)).))..)))..)).))).)))) ( -39.20) >DroYak_CAF1 69513 100 - 1 CCAUCUGCAGAUGCGGCUGCCUCUGCUCCUUGGCUUCCUUUCAUGAUGAUAAAGGUGAUGAUGAUGGCGCUGAAGUGGAUGGUGGCUAGAUGUGCUGAUG .((((.(((.((..(((..((((..((..(..((..((..((((.((.((....)).)).)))).)).))..)))..)).))..)))..)).))).)))) ( -36.90) >consensus CCAUCUGCAGAUGCGGCUGCCUCUGCUCCUUGGCUCCCUUUCAUGAUGAUAAAGGUGAUGAUGAUGGGGCUGAAGUGGAUGGUGGCUAGAUGUGCUGAUG .((((.(((.((..(((..((((..((..((((((((...((((.((.((....)).)).)))).))))))))))..)).))..)))..)).))).)))) (-35.79 = -36.35 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:07 2006