| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,586,964 – 8,587,069 |
| Length | 105 |
| Max. P | 0.918149 |
| Location | 8,586,964 – 8,587,069 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 71.43 |
| Mean single sequence MFE | -24.16 |
| Consensus MFE | -10.74 |
| Energy contribution | -9.50 |
| Covariance contribution | -1.24 |
| Combinations/Pair | 1.56 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.44 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.918149 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8586964 105 - 20766785 ---UCCA-----GAUGAAAAAUUCCUGUGCAUG----AUUUUCCCUUAGACUUCCACCUCAUUUCCCUUUCAUCCUCCGUUGCUUUUCGGUCUCCAUGGGAGUUUCUUCAUGUGGAA ---((((-----.((((((((((((((((...(----(..........((........))................(((........)))))..))))))))))).))))).)))). ( -24.60) >DroGri_CAF1 18882 91 - 1 CCUCCCG-----CGUGCGACAUUCUGUUGCAUG----AUUUGUUUUCAGGU-------------CGC-C-CACCCUCCUCCGCAUAU--GUCUCUAUGGCUAUUUGUUCAUGUGGAA ......(-----((((((((.....)))))))(----(((((....)))))-------------)))-.-........(((((((..--(((.....))).........))))))). ( -23.00) >DroSec_CAF1 62626 105 - 1 ---UCCA-----GAUGAAAAAUUCCUGUGCAUG----AUUUUCCCUUAGACUUCCACCUCAUUUCCCUUUCAUCCUCCGCUGCUUUUCGGUCUCCAUGGGAGUUUCUUCAUGUGGAA ---((((-----.((((((((((((((((...(----(..........((........))................(((........)))))..))))))))))).))))).)))). ( -23.60) >DroEre_CAF1 53280 105 - 1 ---CCCA-----GAUGAAAAAUUCCUGUGCAUG----AUUCUCCCUUGGACUUCCACCUCAUUUCCCUUUCAUCCUCCGCUGCUUCUCGGUCUCCAUGGGAGUUCCUUCAUGUGGAA ---.(((-----.(((((.((((((((((...(----(........(((....)))....................(((........)))))..))))))))))..))))).))).. ( -24.30) >DroWil_CAF1 34036 103 - 1 ---UCCUCAAUGAGUGAGAAAUGCCAUUGCAUGGAAAAUUUGCCUUGAGGCUUUGGCG----UUCUCUUUCCUC---CCCUGC----CUGCCUCUUUGGCUAUUUGUUCAUGUGGAA ---(((...(((((..((((((.((((...))))...))))(((..(((((...((((----............---...)))----).)))))...)))..))..)))))..))). ( -31.06) >DroYak_CAF1 66048 104 - 1 ---CCCU-----GAUGAAAAAUUCCUGUGCAUG----AUUUUC-CUUAGACUUCCACCUCAUUUCCCUUUCAUCCUCCGCUGCUUCUCGGUCUCCAUGGGAGUUUCUUCAUGUGGAA ---.((.-----.((((((((((((((((.(((----(.....-....((........)).........))))...(((........)))....))))))))))).)))))..)).. ( -18.37) >consensus ___CCCA_____GAUGAAAAAUUCCUGUGCAUG____AUUUUCCCUUAGACUUCCACCUCAUUUCCCUUUCAUCCUCCGCUGCUUCUCGGUCUCCAUGGGAGUUUCUUCAUGUGGAA .....................((((...(((((.......(((((..((((......................................))))....)))))......))))))))) (-10.74 = -9.50 + -1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:03 2006