Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,573,567 – 8,573,687 |
Length | 120 |
Max. P | 0.838956 |
Location | 8,573,567 – 8,573,687 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.65 |
Mean single sequence MFE | -33.64 |
Consensus MFE | -25.04 |
Energy contribution | -26.04 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.23 |
Mean z-score | -1.76 |
Structure conservation index | 0.74 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838956 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8573567 120 - 20766785 AAUUAACAUGGGCCACACUGCGUAUGAGCGAUGUGUAUACCAGCUAGUGCGCACAAAUGAACAUCGAAUGCUUUAAGGCCACACGGCGUAUGAGUGAUGCAAUUUUCUGGCCUUAAUGUU ....(((((((((((...(((((((.(((...((....))..))).)))))))........((((....((((..(.(((....))).)..))))))))........))))))..))))) ( -33.20) >DroSec_CAF1 49156 120 - 1 UAUUAACAUGGGCCACGCUGCGUUUGAGCGAUAUGUAUACCAGCUAGUGCGCACAAAUGAACAUCGAAUGCUUUAAGGCCACACGGCGUAUGAGUGAUGCCAUUUUCUGGCCUUAAAGUU .......(((..(.....(((((...(((.............)))...))))).....)..))).....((((((((((((...(((((.......)))))......)))))))))))). ( -33.72) >DroSim_CAF1 53446 120 - 1 UAUUAACAUGGGCCACGCUGCGUAUGAGCGAUAUGCAUACCAGCUAGUCCGCACAAAUGAACAUCGAAUGCUUUAAGGCCACACGGCGUAUGAUUGAUGCCAUUUUCUGGCCUUAAAGUU .........((((...((((.(((((.........)))))))))..))))...................((((((((((((...(((((.......)))))......)))))))))))). ( -37.60) >DroEre_CAF1 40122 97 - 1 C--------AGACCACAUUGCGUAUGAGCGAUG--------------UGCGCGCAAAUGAACAUCGAAUACUUUAGGGCCACACGGCGUAUGAGUGAUGCAC-UGGCUGGCCUUAAAGUU .--------.(.(((((((((......))))))--------------)).)).................((((((((((((..(((.((((.....)))).)-))..)))))))))))). ( -36.20) >DroYak_CAF1 52817 114 - 1 UAUCAACAUAAGCCACACGGCGUAUAAGCUAUU------UCAGUUAGAGCGCACAAAUGAACAUCGAAUACUUUAAGGCUACACUGCGUAUGAGCAAUGUAGUUUGCUGGCCUUAAAGUU ..(((......(((....)))......(((...------........))).......))).........((((((((((((.(((((((.......)))))))....)))))))))))). ( -27.50) >consensus UAUUAACAUGGGCCACACUGCGUAUGAGCGAUAUG_AUACCAGCUAGUGCGCACAAAUGAACAUCGAAUGCUUUAAGGCCACACGGCGUAUGAGUGAUGCAAUUUUCUGGCCUUAAAGUU ...................((((((.(((.............))).)))))).................((((((((((((...(((((.......)))))......)))))))))))). (-25.04 = -26.04 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:00 2006