Locus 2360

Sequence ID 2R_DroMel_CAF1
Location 8,570,244 – 8,570,353
Length 109
Max. P 0.721952
window3898

overview

Window 8

Location 8,570,244 – 8,570,353
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 85.77
Mean single sequence MFE -29.13
Consensus MFE -19.05
Energy contribution -20.09
Covariance contribution 1.04
Combinations/Pair 1.10
Mean z-score -2.23
Structure conservation index 0.65
SVM decision value 0.40
SVM RNA-class probability 0.721952
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8570244 109 + 20766785
UCCGAUUCCAUUUUUUUUUUGCCGACUCAAAGGCAAACACAUAACACAGCGGCAACCCCCGCUGGACACGCCACCCCCCCCUCCCUCUAGAGGGGCUGCUACUCAAAGU
..((..(((........((((((........))))))..........(((((......))))))))..)).......((((((......)))))).............. ( -28.60)
>DroSec_CAF1 45868 101 + 1
UCCGAUUCCAAUUU--UUUUGCCGGCUCAAAGGCAAACACAUAACGCAGCGGCAACCCCCGCUGGACACGCCACCC-C-----CCUCUAGUGGGGCUGCCACUCAAAGU
..............--.((((((........))))))........(.((.((((..((((((((((..........-.-----..)))))))))).)))).)))..... ( -31.12)
>DroSim_CAF1 49577 102 + 1
UCCGAUUCCAAUUU--UUUUGCCGGCUCAAAGGCAAACACAUAACGCAGCGGCAACCCCCGCAGGACACGCCACCCCC-----CCUCUAGUGGGGCUGCCACUCAAAGU
..............--.((((((........))))))........(.((.((((..((((((.(((............-----..))).)))))).)))).)))..... ( -26.84)
>DroEre_CAF1 36889 98 + 1
UCCGAUUCCAU--U--UUUUGCCGGCUCAAAGGCAAACACAUAACGCAACUGCAGCCCCCGCAGGACACGCCCCCCA-------AUCUGGCGGGGCUGCCACUCAAAGU
...........--.--.((((((........))))))........(((.((((.......)))).....(((((((.-------....)).)))))))).......... ( -28.60)
>DroYak_CAF1 49508 102 + 1
UCCGAUUCCAU--U--UUUUGCCGCAUCAAAGGCAAACACAUAACGCAGCUGCACCCCCCGCAGGACACGCCCCCCU---CACUCUCUGGGGGGACUGCCACUCAAAGC
...........--.--.((((((........))))))........((((((((.......))))......((((((.---........)))))).)))).......... ( -30.50)
>consensus
UCCGAUUCCAUUUU__UUUUGCCGGCUCAAAGGCAAACACAUAACGCAGCGGCAACCCCCGCAGGACACGCCACCCCC_____CCUCUAGUGGGGCUGCCACUCAAAGU
.................((((((........))))))..........((.((((..((((((.(((...................))).)))))).)))).))...... (-19.05 = -20.09 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:59 2006