| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,589,153 – 1,589,262 |
| Length | 109 |
| Max. P | 0.640861 |
| Location | 1,589,153 – 1,589,262 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 81.91 |
| Mean single sequence MFE | -34.54 |
| Consensus MFE | -20.39 |
| Energy contribution | -20.03 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.640861 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1589153 109 + 20766785 CGGCCACC---ACCCAUCAUGGGUGGACCAAAACCAUAGGGCAUUGCCGAAAAAGGUGGAUACAUGGGCGGUCGGUAUCUAACAUUUUGGAAACAAAAUUAAAUAAUUACCC .((((.((---((((.....)))))).......((((.(....(..((......))..)...)))))..))))((((......((((((....))))))........)))). ( -36.04) >DroVir_CAF1 2751 103 + 1 CGUCCACCGCCGCCCAUCAUGGGCGGUGCAAAUCCGUAGGGCAUAGCUGAGAAUGGCGGAUACAUGGGUGGCCGAUAGCUGCAG------AAGCAAUAAGCAUU--UUAU-A ((.((((((((((((.....)))))))....((((((....(........)....)))))).....))))).))...(((....------.)))..........--....-. ( -36.50) >DroSec_CAF1 801 109 + 1 CGGCCCCC---ACCCAUCAUGGGUGGACCAAAACCGUAGGGCAUCGCCGAAAAAGGUGGAUACAUGGGCGGUCGGUAUCUAACAUUUUGUGAAGAAAAUUAAUUAAUUACAC (((((.((---((((.....)))))).(((...((....))..(((((......))))).....)))..)))))...(((.((.....))..)))................. ( -29.80) >DroSim_CAF1 801 109 + 1 CGGCCCCC---ACCCCUCAUGGGUGGACCAAAACCGUAGGGCAUCGCCGAAAAAGGUGGAUACAUGGGCGGUCGGUAUCUAACAUUUUGUGAAGAAAAUUAAUUAAUUACCC .(((((((---(.((((.((((...........))))))))..(((((......))))).....)))).))))((((..(((.(((((......)))))...)))..)))). ( -31.70) >DroEre_CAF1 818 108 + 1 CGGCCCCC---ACCCAUCAUGGGUGGGCCAAAACCGUAGGGCAUUGCCGAAAAAGGUGGAUACAUGGGCGGUCGGUAUCUAACAUUUUGGGAACGAAAUGAAAUAAUUAA-A (((((.((---((((.....))))))(((....((....))..(..((......))..).......))))))))........(((((((....)))))))..........-. ( -37.40) >DroYak_CAF1 810 108 + 1 CGGCCCCC---ACCCAUCAUGGGUGGUCCAAAACCGUAGGGCAUCGCCGAAAAAGGUGGAUACAUAGGCGGUCGGUACCUAACAUUUUGGGCACGAAAUGAAAUAAUGAA-A ((((((((---((((.....)))))).........((.(((.(((((((......(((....)))...))).)))).))).)).....)))).))...............-. ( -35.80) >consensus CGGCCCCC___ACCCAUCAUGGGUGGACCAAAACCGUAGGGCAUCGCCGAAAAAGGUGGAUACAUGGGCGGUCGGUAUCUAACAUUUUGGGAACAAAAUGAAAUAAUUAC_A (((((.((...((((.....)))))).......((((.(....(((((......)))))...)))))..)))))...................................... (-20.39 = -20.03 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:12 2006