Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,566,195 – 8,566,287 |
Length | 92 |
Max. P | 0.614361 |
Location | 8,566,195 – 8,566,287 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 96.52 |
Mean single sequence MFE | -23.96 |
Consensus MFE | -21.34 |
Energy contribution | -22.18 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.04 |
Mean z-score | -1.26 |
Structure conservation index | 0.89 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614361 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8566195 92 + 20766785 GGGAUUCCAUCGCAAGCUGCCAGUGCCAUUCAAAAGAGGACUUCCCUUUCAUUUGCGCUUUCAAUGUCGAUAGCUGGCACGACACUUUCCCA ((((.....((((.....))..((((((..(((((((((.....)))))..)))).(((.((......)).))))))))))).....)))). ( -26.40) >DroSec_CAF1 41868 92 + 1 GGGAUUCCAUCGCAAGCUGCCAGUGCCAUUCAAAAGAGGACUUCCCUUUCAUUUGCGCUUUCAAUGUCGAUAGCUGGCACGACACUUUCCCA ((((.....((((.....))..((((((..(((((((((.....)))))..)))).(((.((......)).))))))))))).....)))). ( -26.40) >DroSim_CAF1 45141 92 + 1 GGGAUUCCAUCGCAAGCUGCCAGUGCCAUUCAAAAGAGGACUUCCCUUUCAUUUGCGCUUUCAAUGUCGAUAGCUGGCACGACACUUUCCCA ((((.....((((.....))..((((((..(((((((((.....)))))..)))).(((.((......)).))))))))))).....)))). ( -26.40) >DroEre_CAF1 32939 92 + 1 GGGAUUCCAUCGCAAGCUGCCAGUGCCAUUCAAAGGAGGACUUCCCUUUCAUUUGCGCUUUCAAUGUCGAUAGCUGGCUCGACACUUUCCCA ((((.......(.((((.((.((((......(((((........))))))))).)))))).)..((((((........))))))...)))). ( -23.40) >DroYak_CAF1 45425 89 + 1 GGGAUUCCAUCGCAAGCUGGCAGUACCAUUCACAAGAGGACUUCCCUUUCAUUUGCGCUUUCAAUGUCGAUAGCUGGCACGACACUUUC--- ((((.(((.((......(((.....))).......)))))..)))).......((((((.((......)).)))..)))..........--- ( -17.22) >consensus GGGAUUCCAUCGCAAGCUGCCAGUGCCAUUCAAAAGAGGACUUCCCUUUCAUUUGCGCUUUCAAUGUCGAUAGCUGGCACGACACUUUCCCA ((((...((.(....).))...((((((..(((((((((.....)))))..)))).(((.((......)).))))))))).......)))). (-21.34 = -22.18 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:56 2006