Locus 2356

Sequence ID 2R_DroMel_CAF1
Location 8,564,275 – 8,564,370
Length 95
Max. P 0.635768
window3890

overview

Window 0

Location 8,564,275 – 8,564,370
Length 95
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 95.61
Mean single sequence MFE -27.74
Consensus MFE -25.74
Energy contribution -25.78
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.15
Structure conservation index 0.93
SVM decision value 0.21
SVM RNA-class probability 0.635768
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8564275 95 + 20766785
G-CUGGUCUCAUCCUGGCUGCAUAUUUAUUGCGAAUUACCACGGCUAGCAGUCACUUGGUUUGGAAUAAAAUCUCAUUACUUGCAGCAGCCGUGGC
(-(..(.......)..))((((.......)))).....((((((((.(((((.....(((((......))))).....)).)))...)))))))). ( -26.90)
>DroSec_CAF1 39953 95 + 1
G-CUGGUCUCAUCCUGGCUGCAUAUUUAUUGCGAAUUACCACGGCUAGCAGUCACUUGGUUUGGAAUAAAAUCUCAUUACUUGCAGCAGCCGUGGC
(-(..(.......)..))((((.......)))).....((((((((.(((((.....(((((......))))).....)).)))...)))))))). ( -26.90)
>DroSim_CAF1 43200 94 + 1
G-CUGGUCUCAUCCUGGCUGCAUAUUUAUUGCGAA-UACCACGGCUAGCAGUCACUUGGUUUGGAAUAAAAUCUCAUUACUUGCAGCAGCCGUGGC
(-(..(.......)..))((((.......))))..-..((((((((.(((((.....(((((......))))).....)).)))...)))))))). ( -26.90)
>DroEre_CAF1 31040 96 + 1
GGUUGGCCCCAUCCUGGCUGCAUAUUUAUUGCGAAUUACCACGGCUGGCAGUCACUUGGUUCGGCAUAAAAUCUCAUUACUUGCAGCAGCCGUGGC
....((((.......))))(((.......)))......((((((((((((((.....((((........)))).....)).)))..))))))))). ( -27.40)
>DroYak_CAF1 43340 96 + 1
GGCUGGUCUCGUCCUGGCUGCAUAUUUAUUGCGAAUUACCACGGCUGGCAGUCACUUGGUUUGGCAUAAAAUCUCAUUACUUGCAGCAGCCGUGGC
(((..(.......)..)))(((.......)))......((((((((((((((.....(((((......))))).....)).)))..))))))))). ( -30.60)
>consensus
G_CUGGUCUCAUCCUGGCUGCAUAUUUAUUGCGAAUUACCACGGCUAGCAGUCACUUGGUUUGGAAUAAAAUCUCAUUACUUGCAGCAGCCGUGGC
....((((.......))))(((.......)))......((((((((.(((((.....(((((......))))).....)).)))...)))))))). (-25.74 = -25.78 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:52 2006