Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,561,924 – 8,562,026 |
Length | 102 |
Max. P | 0.961658 |
Location | 8,561,924 – 8,562,026 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 87.15 |
Mean single sequence MFE | -26.45 |
Consensus MFE | -24.55 |
Energy contribution | -24.80 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.00 |
Structure conservation index | 0.93 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961658 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8561924 102 - 20766785 AGGCUGGGUAUAGGACUACUGGCCACAAAUC--------CUGUGAGGCCCAGACAGACUGUUAAAAGGGCUAGAGGGCUUAGCCAGCACAAAAAGAAAAAAAAAAAAGAU ..(((((.((.((..((.((((((.......--------((((.........)))).((......))))))))))..)))).)))))....................... ( -26.70) >DroSec_CAF1 37655 95 - 1 AGGCUGGGGAUAGGACUACUGGCCACAAAUC--------CUGUGAGGCCCAGACAGACUGUUAAAAGGGCUAGAGGGCUUAACCAGCACAAA-------AAAAAAAAGAU ..(((((...((((.((.((((((.......--------((((.........)))).((......)))))))).)).)))).))))).....-------........... ( -25.90) >DroSim_CAF1 40904 95 - 1 AGGCUGGGGAUAGGACUACUGGCCACAAAUC--------CUGUGAGGCCCAGACAGACUGUUAAAAGGGCUAGAGGGCUUAGCCAGCACAAA-------AAAAAGAAGAU ..(((((...((((.((.((((((.......--------((((.........)))).((......)))))))).)).)))).))))).....-------........... ( -25.90) >DroYak_CAF1 41005 100 - 1 AGGCUGGGGAUAGGACUACUGGCCACAAAUCCUGCAAUCCUGUGAGGCCCAGACAGACGGCGAAAAGGGCUAGAGGGCUUAGCCAGCAAAAA-------AAAAAGAG--- ..(((((...((((.((.((((((......(..(((....)))..)(((.........)))......)))))).)).)))).))))).....-------........--- ( -27.30) >consensus AGGCUGGGGAUAGGACUACUGGCCACAAAUC________CUGUGAGGCCCAGACAGACUGUUAAAAGGGCUAGAGGGCUUAGCCAGCACAAA_______AAAAAAAAGAU ..(((((...((((.((.((((((...............((((.........)))).((......)))))))).)).)))).)))))....................... (-24.55 = -24.80 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:51 2006