Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,560,660 – 8,560,770 |
Length | 110 |
Max. P | 0.634785 |
Location | 8,560,660 – 8,560,770 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.75 |
Mean single sequence MFE | -37.60 |
Consensus MFE | -30.42 |
Energy contribution | -31.18 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.03 |
Mean z-score | -1.44 |
Structure conservation index | 0.81 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8560660 110 - 20766785 UUUCAAUUAGCAGCAACUGUCUCACACCAGCCGGCGAUUGUGUUGUCCAGUGUUGCGGCUCACCCUGCCACGUGGACAGGACACUGCCGGGGUG---------CACAGAUAAAAAUG-AA .................(((((..((((..((((((..(((.(((((((.(((.((((......)))).)))))))))).))).))))))))))---------...)))))......-.. ( -38.90) >DroSec_CAF1 36392 110 - 1 UUUCAAUUAGCAGCAACUGUCUCACACCAGCCGGCGAUUGUGUUGUCCAGUGUUGCGGCUCACCCUGCCACGUGGAAAGGACACUGCCGGGGUG---------CACCGAUAAAAAUG-AA .((((....((((((.(((..(.((((..(....)....)))).)..)))))))))((..(((((((.((.(((.......))))).)))))))---------..))........))-)) ( -34.90) >DroSim_CAF1 39631 110 - 1 UUUCAAUUAGCAGCAACUGUCUCACACCAGCCGGCGAUUGUGUUGUCCAGUGUUGCGGCUCACCCUGCCACGUGGACAGGACACUGCCGGGUUG---------CACCGAUAAAAAUG-AA .........(((((..(((........)))((((((..(((.(((((((.(((.((((......)))).)))))))))).))).))))))))))---------).............-.. ( -39.40) >DroEre_CAF1 25144 111 - 1 UUUCAAUUAGCAGCAACUGUCUCACACCAGCCGGCGAUUGUGUUGUCCAGUGUUGCGGCUCACCCUGCCACGUGGAAAGGACACAGCCAGGGUG---------CACAGAUAAAAAAGCAA .........((......(((((..((((....(((...((((((.((((.(((.((((......)))).)))))))...)))))))))..))))---------...))))).....)).. ( -31.10) >DroYak_CAF1 39711 119 - 1 UUUCAAUUAGCAGCGAGUGUCUCACACCAGCUGGCGAUUGUGUUGUCCAGUGUUGCGGCUCACCCUGCCACGUGGACAGGACACAGCCAGGGUGACCCAGGUACACUGUUAAAAAUG-GA ......(((((((...((..((..((((..(((((...(((.(((((((.(((.((((......)))).)))))))))).)))..)))))))))....))..)).))))))).....-.. ( -43.70) >consensus UUUCAAUUAGCAGCAACUGUCUCACACCAGCCGGCGAUUGUGUUGUCCAGUGUUGCGGCUCACCCUGCCACGUGGACAGGACACUGCCGGGGUG_________CACAGAUAAAAAUG_AA .........((((...))))....((((..(((((...(((.(((((((.(((.((((......)))).)))))))))).)))..))))))))).......................... (-30.42 = -31.18 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:49 2006