Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,558,119 – 8,558,239 |
Length | 120 |
Max. P | 0.686834 |
Location | 8,558,119 – 8,558,239 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.75 |
Mean single sequence MFE | -40.80 |
Consensus MFE | -33.14 |
Energy contribution | -34.22 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.15 |
Mean z-score | -1.56 |
Structure conservation index | 0.81 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686834 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8558119 120 + 20766785 AUCGAUUCGUCGAAGCGAGGCAUUGCUAUUGGUCGGAUUUGAAGGGCAAACGCGGUUGGCCGAAAACGGGACAAGCCGAAGAAUGCCGAAUGCUGCCGAUCGCUCUUUGAUUCAAUGAUU ((((((((((((((((((....))))).)))).))))))((((...((((.(((((((((......(((......)))......((.....)).)))))))))..)))).))))..))). ( -34.70) >DroSec_CAF1 33792 120 + 1 AUCGAGUUGUCGAAGCGAGGCAUUGCGAUUGGUCGGAUUUGAAGGGCAAACGCGGUUGGCCGAAAUCGGGGCAAGCCGAAGAUAGCCGAAUGCUGCCGAUCGCUCUUUGAUUCAAUGAUU ....(((..(.(((.(((((....(((((((((.(.((((....(((.....(((((.(((........))).)))))......))))))).).))))))))).))))).))).)..))) ( -40.30) >DroSim_CAF1 37096 120 + 1 AUCGAGUCGUCGAAGCGAGGCAUUGCGAUUGGUCGGAUUUGAAGGGCAAACGCGGUUGGCCGAAAACGGGGCAAGCCGAAGAUAGCCGAAUGCUGCCGAUCGCUCUUUGAUUCAAUGAUU ....((((((.(((.(((((....(((((((((.(.((((....(((.....(((((.(((........))).)))))......))))))).).))))))))).))))).))).)))))) ( -43.00) >DroEre_CAF1 22518 120 + 1 AUGCAGUCGUUUGAGCGAAGCAAUGCGAUUGGUCGGAUUUAAAGGGCAAACGCAAUUGGCGGAAACAGAGGCAAGCCGAAGAUAGCCGAAUGCAGCCGAGCGCUCUUUGAUUCAACGAUU ...((((((((((.......))).)))))))((((((.(((((((((....(((.((((((....)...((....)).......))))).))).((...))))))))))).))..)))). ( -39.20) >DroYak_CAF1 36828 120 + 1 AUCGAGUCGUUGGAGCGAAGCAAUGCGAUUGGUCGGAUUUGAGGGGCGAACCCGAUUGGCGGAAAACGAGGCGAGCCGAAGUUAGCCGAGUGCAGCCGAUCGCAAUUCGAUUCAAUGAUU ....((((((((((.((((....((((((((((.(.((((..(((.....)))....(((....(((..((....))...))).))))))).).)))))))))).)))).)))))))))) ( -46.80) >consensus AUCGAGUCGUCGAAGCGAGGCAUUGCGAUUGGUCGGAUUUGAAGGGCAAACGCGGUUGGCCGAAAACGGGGCAAGCCGAAGAUAGCCGAAUGCUGCCGAUCGCUCUUUGAUUCAAUGAUU ....((((((.(((.(((((....(((((((((.(.((((....(((.....(((((.(((........))).)))))......))))))).).))))))))).))))).))).)))))) (-33.14 = -34.22 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:39 2006