Locus 235

Sequence ID 2R_DroMel_CAF1
Location 1,588,352 – 1,588,458
Length 106
Max. P 0.661707
window514

overview

Window 4

Location 1,588,352 – 1,588,458
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.73
Mean single sequence MFE -30.60
Consensus MFE -19.97
Energy contribution -20.25
Covariance contribution 0.28
Combinations/Pair 1.17
Mean z-score -1.83
Structure conservation index 0.65
SVM decision value 0.27
SVM RNA-class probability 0.661707
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1588352 106 - 20766785
--AAUUCCAAUAUCUA-----UAUUCAUUCUCGUUGCUUGCAGACCCGGUGGUUUUGAUUAUCGACCCAGAUCACACUACCGGGACUUGGACGCGCCGCAAGAACCAUACUAG-------
--..............-----...........(((.(((((...(((((((((..(((((.........))))).)))))))))....((.....))))))))))........------- ( -28.10)
>DroVir_CAF1 1429 112 - 1
--AAUUCCUCACUCUAAACAACAUUCAUUCUCGUUGCUUGCAGACCCGGUGGUUUUGAUUAUCGCGCCAGAUCACACUACCGGGACUUGGACGCGCCCCAAGAGCCGUACUAAG------
--.........((.(((.((((..........)))).))).)).(((((((((..(((((.........))))).))))))))).((((((((.((.......))))).)))))------ ( -29.50)
>DroGri_CAF1 1273 118 - 1
--UAUUCCAAACUCUAAACAACAUUCAUUCUUGUUGCUUACAGACCCGGUGGUUUUGAUUAUCGCGCCAGAUCACACUACCGGGACUUGGACGCGCCGCAAGAGCCGUACUAAAUAAUAA
--....((((.((.(((.(((((........))))).))).)).(((((((((..(((((.........))))).)))))))))..))))(((.(((....).)))))............ ( -35.10)
>DroWil_CAF1 1 107 - 1
AAAAGUUUAAGUUUUU-----GCUUC-GUUUCGUUGCUUACAGACCCGGUGGUUUUGAUUAUCGACCCAGAUCACACUACCGGGACUUGGAUGCCCCGCAAGAGCCGUACUAA-------
...(((....((((((-----((...-.................(((((((((..(((((.........))))).)))))))))....((.....))))))))))...)))..------- ( -30.00)
>DroMoj_CAF1 1 111 - 1
--AAUGCCUAAAUCUAAACCACAUUCAUUUUCGUUGCUUGCAGGCCCGGUGGUUUCGAUUACCGCGCCAGGUCUCACUACCGAGACUUGGACGCGCCCCAAGAGCCGUACUAA-------
--..............................(((.((((..(((..((((((....))))))((((((((((((......))))))))).)))))).)))))))........------- ( -34.90)
>DroAna_CAF1 3 107 - 1
--AAUUCCAAAAUAUA-----AAUUCAUUUUCGUUGCUUACAGACCCGGUGGUUUUGAUUAUCGACCCAGAUCACACUACCGGGACUUGGAUGCGCCGCAAGAACCGUACUAGC------
--...(((((......-----...........((.....))...(((((((((..(((((.........))))).)))))))))..)))))((((.(....)...)))).....------ ( -26.00)
>consensus
__AAUUCCAAAAUCUA_____CAUUCAUUCUCGUUGCUUACAGACCCGGUGGUUUUGAUUAUCGACCCAGAUCACACUACCGGGACUUGGACGCGCCGCAAGAGCCGUACUAA_______
.............................(((.((((.......(((((((((..(((((.........))))).)))))))))....((.....)))))))))................ (-19.97 = -20.25 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:11 2006