Locus 2349

Sequence ID 2R_DroMel_CAF1
Location 8,557,671 – 8,557,787
Length 116
Max. P 0.974066
window3876

overview

Window 6

Location 8,557,671 – 8,557,787
Length 116
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 76.87
Mean single sequence MFE -32.60
Consensus MFE -20.42
Energy contribution -22.05
Covariance contribution 1.63
Combinations/Pair 1.19
Mean z-score -2.26
Structure conservation index 0.63
SVM decision value 1.72
SVM RNA-class probability 0.974066
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8557671 116 + 20766785
AGCAUUAGCCGAAUUCCUAACUAGGAAUUGGAAAUAGUGGUAGUUACUAUUUCCAAGUGGAUGGGCCUGGUGAACAUUAGGCCUUCCUGGCCACGUUGCACUACAUCUGAAAUUUC
.(((...(((((((((((....)))))))((((((((((.....))))))))))....(((.(((((((((....)))))))))))))))).....)))................. ( -41.50)
>DroSec_CAF1 33361 116 + 1
AGCAUUAACCGAAUCUUUAACUAGGAAUUGGAAAUAGUGGUACUUACAAUUUCCAAGUGGAUGGGCCUGGUAAACAUUAGGUGCUCCUGGCCACGUGGCUCUACACCCGAUUCUUC
..........(((((.....((((((.((((((((.(((.....))).))))))))......(.(((((((....))))))).)))))))....(((......)))..)))))... ( -31.60)
>DroSim_CAF1 36655 116 + 1
AGCAUUAACCGAAUCUUUAACUAGGAAUUGGAAAUAGUGGUACUUAAUAUUUCCAAGUAGAUGGGCUUGGUAAACAUUAGGUCCUCCUGGCCACGUUGCACUACACCCGAAACUGC
.(((....((((.((((.....)))).)))).....((((((((((((.(((((((((......)))))).))).))))))).......)))))..)))................. ( -28.71)
>DroEre_CAF1 22150 111 + 1
AACUUUAAUCAAAUCCCCAUCUGGUAAUUUGAAGUAGUGGUACUUACUAAUUCCACGUGGAUGGGUCUGGUGAACAUCACGUCCUCCAUGCU-----GAAUUCAAUACCAAACCAA
........((((((..((....))..)))))).....(((((......(((((..((((((.(((..((((....))))..)))))))))..-----)))))...)))))...... ( -28.60)
>consensus
AGCAUUAACCGAAUCCCUAACUAGGAAUUGGAAAUAGUGGUACUUACUAUUUCCAAGUGGAUGGGCCUGGUAAACAUUAGGUCCUCCUGGCCACGUUGCACUACACCCGAAACUUC
....................((((((.((((((((((((.....))))))))))))......(((((((((....))))))))))))))).......................... (-20.42 = -22.05 +   1.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:38 2006