| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,554,327 – 8,554,443 |
| Length | 116 |
| Max. P | 0.906542 |
| Location | 8,554,327 – 8,554,443 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.97 |
| Mean single sequence MFE | -36.86 |
| Consensus MFE | -29.85 |
| Energy contribution | -29.89 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8554327 116 - 20766785 UUUGCUCUUUUUUGCUGAAAAUUCAACGGGGCGCAAU---CUUUUCGGCUCAUUUGCCGCCUCAGUGGCCAAGAGUCCAUUGUUUUUCCCGCCCGUCGUCUGCAAAGUUGGCAA-AACGA (((((.(..((((((.((........(((((.(((((---......(((((.((.(((((....))))).))))))).)))))...))))).......)).))))))..)))))-).... ( -34.06) >DroSec_CAF1 29949 111 - 1 UUUG--GCUUUUUGCUGAAAAUUCAACGGGGCGCAAU---GUUUUCGGCUCAUUUGCCGCCUCAGUGGCCAAGAGUCCAUUGUUUUUCCCGCCCG---UCUGCAAAGUUGGCAA-AACGA ((((--.(.((((((.((........(((((.(((((---(..((((((......)))(((.....)))...)))..))))))...)))))....---)).))))))..).)))-).... ( -35.00) >DroSim_CAF1 33533 113 - 1 UUUGCUGCUUUUUGCUGAAAAUUCAACGGGGCGCAAU---GUUUUCGGCUCAUUUGCCGCCUCAGUGGCCAAGAGUCCAUUGUUUUUCCCGCCCG---UCUGCAAAGUUGGCAA-AACGA ((((((...((((((.((........(((((.(((((---(..((((((......)))(((.....)))...)))..))))))...)))))....---)).))))))..)))))-).... ( -37.40) >DroEre_CAF1 18832 114 - 1 UGUGCUCGUUUUUGUUGAAAAACCAAGGGGGCGCAAU---GUUUUCGGCUCAUUUGCCGCCUCAGUGGCCAAGAGUCCAUUGUUUUUCCCGCCCG---UCUGCAAAGUUGGCAAAAACGA .....((((((((((..(.......((((((((((((---(..((((((......)))(((.....)))...)))..))))).......))))).---)))......)..)))))))))) ( -41.13) >DroYak_CAF1 33175 116 - 1 UGUGCUCUUUUUUGCUGCAAAUGUAAGGGGGCGCAAUGAUGUUUUCGGCUCAUUUGCCGCCUCAGUGGCCAAGAGUCCAUUGUUUUUACCGCCCG---UCUGCAAAGUUGGCAA-AACGA ..(((.(..(((((((((....)))((((((((.((..(((..((((((......)))(((.....)))...)))..)))..)).....))))).---)))))))))..)))).-..... ( -36.70) >consensus UUUGCUCCUUUUUGCUGAAAAUUCAACGGGGCGCAAU___GUUUUCGGCUCAUUUGCCGCCUCAGUGGCCAAGAGUCCAUUGUUUUUCCCGCCCG___UCUGCAAAGUUGGCAA_AACGA ..((((...(((((((((....)))...(((((.............(((((.((.(((((....))))).)))))))............))))).......))))))..))))....... (-29.85 = -29.89 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:29 2006