Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,554,038 – 8,554,138 |
Length | 100 |
Max. P | 0.984703 |
Location | 8,554,038 – 8,554,138 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.35 |
Mean single sequence MFE | -21.52 |
Consensus MFE | -12.98 |
Energy contribution | -13.30 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.09 |
Mean z-score | -3.10 |
Structure conservation index | 0.60 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984703 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8554038 100 - 20766785 AAUGCCAAAAACUGUGC------AGAUACAGAUGUUGUAAAUUAGAACUGCACACAUUCAAAAGUUUGCCCUUAAACUUUUCAUGACAAUAUAAACUAGGCAACAA-------------- ..((((......(((((------((...(.(((.......))).)..)))))))(((..(((((((((....))))))))).))).............))))....-------------- ( -21.10) >DroSec_CAF1 29659 99 - 1 AAUGCCAAAAACUGUGC------AGAUACAGAUGUCGUAAAUUAGAACUGCACACAUUCAAAAGUUUGCCCUUAAACUUUUCAUGACAAU-UAAACAAGGCAACAA-------------- ..((((......(((((------((...(.(((.......))).)..)))))))(((..(((((((((....))))))))).))).....-.......))))....-------------- ( -21.10) >DroSim_CAF1 33239 99 - 1 AAUGCCAAAAACUGUGC------AGAUACAGAUGUCGUAAAUUAGAACUGCACACAUUCAAAAGUUUGCCCUUAAACUUUUCAUGACAAU-UAAACAAGGCAACAA-------------- ..((((......(((((------((...(.(((.......))).)..)))))))(((..(((((((((....))))))))).))).....-.......))))....-------------- ( -21.10) >DroEre_CAF1 18532 113 - 1 AAUGCCAAAAACUCUGC------AGAUACAGAUGUCGUAAAUUAAAACUGCACACAUUCAAAAGUUUUGCCUUCUACUUUUGAUAACAAU-AAAACAAGGCAACAACUGCCAGAUAAAUA ..((((........(((------((.....(((.......)))....))))).....((((((((..........)))))))).......-.......)))).................. ( -16.90) >DroYak_CAF1 32865 119 - 1 AAUGCUAAAAAGUGUGCAGACGCAGAUACAGAUGUCGUAAAUUAAAACUGCACACACUCAAAAGUUUUUCCUUCAACUUUUGAUGACAAU-GAAACAAAGCAUUAACGGCAAGAAAAAUA ((((((.....(((((((((((((........)).))).........))))))))..(((((((((........))))))))).......-.......))))))................ ( -27.40) >consensus AAUGCCAAAAACUGUGC______AGAUACAGAUGUCGUAAAUUAGAACUGCACACAUUCAAAAGUUUGCCCUUAAACUUUUCAUGACAAU_UAAACAAGGCAACAA______________ ..((((......(((((.......((((....))))((........)).))))).....((((((((......)))))))).................)))).................. (-12.98 = -13.30 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:28 2006