Locus 2341

Sequence ID 2R_DroMel_CAF1
Location 8,550,787 – 8,550,907
Length 120
Max. P 0.755755
window3860

overview

Window 0

Location 8,550,787 – 8,550,907
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.08
Mean single sequence MFE -30.96
Consensus MFE -24.00
Energy contribution -25.28
Covariance contribution 1.28
Combinations/Pair 1.06
Mean z-score -2.03
Structure conservation index 0.78
SVM decision value 0.49
SVM RNA-class probability 0.755755
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8550787 120 - 20766785
CCUGGCCCACUGGUCGCCACACUAAUUGGAACACAUGAUAAAGUAACUUUUGGAGGAAACACUAAAGUUCCAAGAGCGUCUGGCGAAGCACACAAGUGAACAGGAAGAAAAAGUCCAAGA
((((...((((..((((((.((...(((((((((........))....(((((.(....).))))))))))))....)).))))))........))))..))))................ ( -33.40)
>DroSec_CAF1 26310 120 - 1
CCUGUGCCACUGGUCGCCACACUAAUUGGAACACAUGAUAAAGUAACUUUUGGAGGAAACACUAAAGUUCCAAGAGCGUCUGGCGAAGCACACAAGUGAACAGGAAGAAAAAGUCCAAGA
(((((..((((..((((((.((...(((((((((........))....(((((.(....).))))))))))))....)).))))))........)))).)))))................ ( -35.40)
>DroSim_CAF1 29935 120 - 1
CCUGUCCCACUGCUGGCCACACUAAUUGGAACACAUGAUAAAGUAACUUUUGGAGGAAACACUAAAGUUCCAAGAGCGUCUGGCGAAGCACACAAGUGAACAGGAAGAAAAAGUCCAAGA
(((((..(((((((.((((.((...(((((((((........))....(((((.(....).))))))))))))....)).))))..))).....)))).)))))................ ( -33.60)
>DroEre_CAF1 15321 120 - 1
ACUGCCCCACUGGUCGCCGCACUAAUUGGAACACAUGAUAAAGUAACUUUUGGAGGAAACACUAAAGUUCCAAGAGCGUCUGGCGCAGCACACAAAUGAACAGGAAGAAAAAGUGCAAGA
..(((((....))..((((.((...(((((((((........))....(((((.(....).))))))))))))....)).)))))))((((.....................)))).... ( -26.40)
>DroYak_CAF1 29554 118 - 1
--UGCCCCACUGGUCGCCACACUAAUUGGAACACAUGAUAAAGUAACUUUUGGAGGAAACACUGAAGUUCCAAGAGCGUCUGGCGCAGCACACAAAUAAACAGGAAGAAAAAGUCCAAGA
--.......(((..(((((.((...(((((((((........))....((..(.(....).)..)))))))))....)).))))))))..............(((........))).... ( -26.00)
>consensus
CCUGCCCCACUGGUCGCCACACUAAUUGGAACACAUGAUAAAGUAACUUUUGGAGGAAACACUAAAGUUCCAAGAGCGUCUGGCGAAGCACACAAGUGAACAGGAAGAAAAAGUCCAAGA
((((...((((.(((((((.((...(((((((((........))....(((((.(....).))))))))))))....)).)))))....))...))))..))))................ (-24.00 = -25.28 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:23 2006