Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,548,663 – 8,548,774 |
Length | 111 |
Max. P | 0.537215 |
Location | 8,548,663 – 8,548,774 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.20 |
Mean single sequence MFE | -25.10 |
Consensus MFE | -14.96 |
Energy contribution | -17.20 |
Covariance contribution | 2.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.91 |
Structure conservation index | 0.60 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8548663 111 - 20766785 CGGAAUGCGACCCUCUCGUUGGGUGGCUCUACACUCGAAGUGAAUAAAUUACUUAUAGAUCUAGUUGAUCUUAUAAUAUCAGCUG---CCCAACUAAUCUUAUAUAAUG------CCUUA .((........))....((((((..(((...(((.....)))..........(((((((((.....)))).)))))....)))..---))))))...............------..... ( -26.60) >DroSec_CAF1 24190 113 - 1 CGGAAUGCGACCCUCUCGUUGGGUUGUUCU-----CCAAGUGAAUAAAUUACUUAUAGAUCUAGUUGAUCUUAUAAUAUCAGCUGG--CCCAACUAAUCUUAUAUAAUGCCCCUGCCUUA .(((..(((((((.......)))))))..)-----))((((((.....))))))...(..(((((((((........)))))))))--..)............................. ( -27.90) >DroSim_CAF1 27829 113 - 1 CGGAAUGCGACCCUCUCGUUGGGUUGUUCU-----CCAAGUGAAUAAUUUACUUAUAGAUCUAGUUGAUCUUAUAAUAUCAGCUGG--CCCAACUAAUCUUAUAUAAUGCCCAUGCCCUA .(((..(((((((.......)))))))..)-----))((((((.....))))))...(..(((((((((........)))))))))--..)............................. ( -27.90) >DroEre_CAF1 13364 109 - 1 CGGAAUGCGACCCUCUCGUUGGGUUGCGCU-----CAAAGUGAAUAAAUUACUUCAAGAUCUAGUUGAUCUUAUACUAUCAGCUUG---CCAACUAAUCUUAUAUAAUGCC---GCCUUA (((...(((((((.......)))))))(((-----..((((((.....)))))).((((((.....))))))........)))...---....................))---)..... ( -25.70) >DroYak_CAF1 27465 99 - 1 CGGAAUGCGAGCCCCUCA------------------AAAGUGAAUAAAUUACUUAAAGAUCUAGUUGAUCGUAUACUAUCAGCUUCGUCGCAACUAAUCUUAUAUAAUGUC---GCCUUA ......((((........------------------.((((((.....))))))...(((..(((((((.(....).)))))))..)))....................))---)).... ( -17.40) >consensus CGGAAUGCGACCCUCUCGUUGGGUUGCUCU_____CAAAGUGAAUAAAUUACUUAUAGAUCUAGUUGAUCUUAUAAUAUCAGCUGG__CCCAACUAAUCUUAUAUAAUGCC___GCCUUA .((...(((((((.......)))))))..........((((((.....))))))......(((((((((........))))))))).............................))... (-14.96 = -17.20 + 2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:18 2006