Locus 2337

Sequence ID 2R_DroMel_CAF1
Location 8,548,336 – 8,548,453
Length 117
Max. P 0.995400
window3854

overview

Window 4

Location 8,548,336 – 8,548,453
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.91
Mean single sequence MFE -30.38
Consensus MFE -28.04
Energy contribution -28.48
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.84
Structure conservation index 0.92
SVM decision value 2.57
SVM RNA-class probability 0.995400
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8548336 117 - 20766785
CUGGUUUGAAAUUGCGAACGGGACGACUUCGAAUUUAGAUGCCGAUAAGUAAAAUGUAUCUGCGGCAAAAGCUAAAAAUCGAGGCGCAAAAUUCAAUGCGAGAGCGGCAA---CAACAAC
((.(((((......))))).)).((.((((((.(((((.(((((...((..........)).)))))....)))))..))))))))...........((....))(....---)...... ( -29.20)
>DroSec_CAF1 23877 114 - 1
CUGGUUUGAAAUUGC----G--GCGACUUCGAAUUUAGAUGCCGAUAAGUAAAAUGUAUCUGCGGCAAAAGCUAAAAAUCGAGGCGCAAAAUUCAAUGCGAGAGCGGCAACAACAACAAC
.....(((...((((----.--(((.((((((.(((((.(((((...((..........)).)))))....)))))..))))))))).........(((....)))))))...))).... ( -30.50)
>DroSim_CAF1 27513 118 - 1
CUGGUUUGAAAUUGCGAACG--GCGACUUCGAAUUUAGAUGCCGAUAAGUAAAAUGUAUCUGCGGCAAAAGCUAAAAAUCGAGGCGCAAAAUUCAAUGCGAGAGCGGCAGCAACAACAAC
.....(((...(((((((..--(((.((((((.(((((.(((((...((..........)).)))))....)))))..)))))))))....)))..(((....)))...))))...))). ( -31.70)
>DroEre_CAF1 13011 115 - 1
CUGGUUUGAAAUUGCGAACG--GCGACUUCGAAUUUAGAUGCCGAUAAGUAAAAUGUAUCUGCGGCCAAAGCUAAAAAUCGAGGCGCAAAAUUCAAUGCGAGAGCGGCAA---CAACAAC
.....(((...(((((((..--(((.((((((.(((((..((((...((..........)).)))).....)))))..)))))))))....)))..(((....)))))))---...))). ( -29.70)
>DroYak_CAF1 27164 115 - 1
CUGGUUUGAAAUUGCGAACG--GCGACUUCGAAUUUAGAUGCCGAUAAGUAAAAUGUAUCUGCGGCCAAAGCUAAAAAUCGAGGCGCAAAAUUCAAUGCGAGAGCGGCAA---GAACAAC
.....(((...(((((((..--(((.((((((.(((((..((((...((..........)).)))).....)))))..)))))))))....)))..(((....)))))))---...))). ( -30.80)
>consensus
CUGGUUUGAAAUUGCGAACG__GCGACUUCGAAUUUAGAUGCCGAUAAGUAAAAUGUAUCUGCGGCAAAAGCUAAAAAUCGAGGCGCAAAAUUCAAUGCGAGAGCGGCAA___CAACAAC
...(((.....((((.......(((.((((((.(((((.(((((...((..........)).)))))....)))))..))))))))).........(((....)))))))....)))... (-28.04 = -28.48 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:17 2006