Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,548,134 – 8,548,226 |
Length | 92 |
Max. P | 0.569216 |
Location | 8,548,134 – 8,548,226 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.46 |
Mean single sequence MFE | -20.82 |
Consensus MFE | -17.50 |
Energy contribution | -17.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.46 |
Structure conservation index | 0.84 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569216 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8548134 92 + 20766785 UCUCUUC----------------------------UCAACUGGCAACUGGCCGCAUAAAUUUACUCAAAAGCUGACGCUAACUAAAGUCUCGACUUUUGCUUGGCUCCUCGGCCUCAAAA .......----------------------------......(((.....)))..................(((((.((((((.(((((....))))).).)))))...)))))....... ( -17.50) >DroSec_CAF1 23684 92 + 1 UCUCUUC----------------------------UCAACUGGCAACUGGCCGCAUAAAUUUACUCAAAAGCUGACGCUAACUAAAGUCUCGACUUUUGCUUGGCUCCUCGGCCUCAAAA .......----------------------------......(((.....)))..................(((((.((((((.(((((....))))).).)))))...)))))....... ( -17.50) >DroSim_CAF1 27320 92 + 1 UCUCUUC----------------------------UCAACUGGCAACUGGCCGCAUAAAUUUACUCAAAAGCUGACGCUAACUAAAGUCUCGACUUUUGCUUGGCUCCUCGGCCUCAAAA .......----------------------------......(((.....)))..................(((((.((((((.(((((....))))).).)))))...)))))....... ( -17.50) >DroEre_CAF1 12830 95 + 1 UCGCCUC-------------------------CUCUUAACUGGCAACUGGCCGCAUAAAUUUGCUCAAAAGCUGACGCUAACUAAAGUCUCGACUUUUGCUUGGCUCCUCGGCCUCAAAA ..(((..-------------------------.........)))....(((((((......))).....(((..(.((.....(((((....))))).)))..)))....))))...... ( -24.40) >DroYak_CAF1 26936 120 + 1 UCUCCUCUCAACUGCCAACUGCCGACUGCCGACUUCCAACUGGCAACUGGCCGCAUAAAUUUACUCAAAAGCUGACGCUAACUAAAGUCUCGACUUUUGCUUGGCUCCUCGGCCUCAAAA ....................(((((..(((((.........(((.....))).............((((((.(((.(((......))).))).)))))).)))))...)))))....... ( -27.20) >consensus UCUCUUC____________________________UCAACUGGCAACUGGCCGCAUAAAUUUACUCAAAAGCUGACGCUAACUAAAGUCUCGACUUUUGCUUGGCUCCUCGGCCUCAAAA .........................................(((.....)))..................(((((.((((((.(((((....))))).).)))))...)))))....... (-17.50 = -17.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:16 2006