Locus 2334

Sequence ID 2R_DroMel_CAF1
Location 8,544,480 – 8,544,598
Length 118
Max. P 0.715091
window3850

overview

Window 0

Location 8,544,480 – 8,544,598
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.06
Mean single sequence MFE -31.42
Consensus MFE -23.22
Energy contribution -23.22
Covariance contribution 0.00
Combinations/Pair 1.09
Mean z-score -2.19
Structure conservation index 0.74
SVM decision value 0.39
SVM RNA-class probability 0.715091
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8544480 118 - 20766785
AAGGUGGAAAAGGGCAUUUUUGAAAAAUACAAAAAAGGGG-UCCGAGGACGAGGACUACAAA-ACAGAAUCGAAGGACGAGGCCGAAGCCACGACGAACGGCGGAAACAUGUUCAAUUAU
...((((....((.(.((((((.......)))))).(..(-(((........))))..)...-......((....))...).))....))))...(((((..(....).)))))...... ( -29.50)
>DroSec_CAF1 20074 117 - 1
AAGGUGGAAAAGGGCACUUUUGAAAAAUGCUAA-AAGGGG-UCCGAGGACGAGGACUACAAA-ACGGAAUCGAAGGACGAGGCCGAAGCCACGACGAACGGCGGAAACAUGUUCAAUUAU
...(((((((((....)))))............-..(..(-(((........))))..)...-.(((..(((.....)))..)))...))))...(((((..(....).)))))...... ( -31.20)
>DroSim_CAF1 23690 117 - 1
AAGGUGAAAAAGGGCACUUUUGAAAAAUGCUAA-AAGGGG-UCCGAGGACGACGACUACAAA-ACGGAAUCGAAGGACGAGGCCGAAGCCACGACGAACGGCGGAAACAUGUUCAAUUAU
..(((......((((.((((((........)))-)))..)-)))..................-.(((..(((.....)))..)))..))).....(((((..(....).)))))...... ( -28.50)
>DroEre_CAF1 9392 118 - 1
AUUGUGGAAAAGGGCACUUUUGAAAAAUGCCAA-AAGGGG-UCCGAGGACGAGGACUUCAGACACAGAAUCGAAGGACGAGGCCGAAGCCACGACGAACAGCGGAAACAUGUUCAAUUAU
.((((((....((((.((((((........)))-)))..)-)))..((.(..(..((((.((.......))))))..)..).))....)))))).(((((..(....).)))))...... ( -35.60)
>DroYak_CAF1 23382 117 - 1
CAAGUGGAA-GGGGCACUUUUGAAAAAUGCUAA-AAGGGGUUCCGAGGACGAGGACAACAAA-ACGGAAUCGAAGGACGAGGCCGAAGCCACGACGAACAGCGGAAACAUGUUCAAUUAU
...((((..-(((((.((((((........)))-)))..)))))..................-.(((..(((.....)))..)))...))))...(((((..(....).)))))...... ( -32.30)
>consensus
AAGGUGGAAAAGGGCACUUUUGAAAAAUGCUAA_AAGGGG_UCCGAGGACGAGGACUACAAA_ACGGAAUCGAAGGACGAGGCCGAAGCCACGACGAACGGCGGAAACAUGUUCAAUUAU
...((((.....(((.(((.................(..(.(((........))))..)..........((....)).))))))....))))...(((((..(....).)))))...... (-23.22 = -23.22 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:13 2006